Table 2. Databases containing associations between genetic variations, associated phenotypes and genetic tests.
Name | Description |
---|---|
PharmGKB | A large database of curated knowledge and raw data about associations between genes, genetic variants, drug response and disease [34,120] |
GWAS Central (formerly called HGVbaseG2P) |
A database of GWAS that also provides summaries of study results [121] |
SNPedia | A wiki-based platform containing information on phenotypes associated with SNP variants, population prevalence of genetic variants and SNP microarrays [122] |
OMIM | Information about diseases with Mendelian inheritance, including references to the implicated genes [123] |
dbGaP | Results of studies that have investigated the interaction of genotype and phenotype [124] |
GEN2PHEN Knowledge Center | Integrated genotype-to-phenotye data with facilities for data annotation and user feedback [35,125] |
GET-Evidence | A large database of automatically annotated and then manually curated information about the impact of genetic variations [126] |
HuGE Navigator | Information on genetic variants, gene–disease associations, gene–gene and gene–environment interactions and evaluation of genetic tests [127] |
GAD | Diseases associated with genetic variants [128] |
Genotator | Aggregated gene–disease relationship data containing an integrated view over other datasets [129] |
NCBI GeneTests | This resource concerns genetic tests used in diagnostic and genetic counseling [130] |
The Genetic Testing Registry | A database (under development) about genetic markers and tests that enable their clinical exploration [131] |
dbGaP: Database of Genotypes and Phenotypes; GAD: Genetic Association Database; GET: Genomes, environments, traits; GWAS: Genome-wide association studies; OMIM: Online Mendelian Inheritance in Man; PharmGKB: Pharmacogenomics Knowledge Database.