TABLE 1.
Expedition | Drillling site | Core | Depth (mbsf) | TOC (wt%) | Sulfateb (mM) | Methaneb (mM) | Microbial cell abundance (cells/g sediment)c | DNA extraction method | DNA recovery (ng/g sediment) | qPCR (copies/g sediment)d | qPCR/cell abundance ratio | Microbial abundance estimated from quantity of DNA with assumed avg genome size (kb) of: |
|||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2,000 |
3,800 |
||||||||||||||
CCN (cells/g sediment) | Biomass coverage (%) | CCN (cells/g sediment) | Biomass coverage (%) | ||||||||||||
Chikyu shakedown cruise CK06-06 | C9001C | 2H-2 | 9.5 | 1.3 | 0.16 | 3.01 | 2.77 × 108 | Kit | 183.4 | 4.30 × 107 | 0.16 | 8.36 × 107 | 30.2 | 4.85 × 107 | 17.5 |
Hot alkaline | 489.3 | 4.09 × 107 | 0.15 | 2.23 × 108 | 80.6 | 1.29 × 108 | 46.7 | ||||||||
5H-1 | 35.4 | 0.81 | NDe | 1.68 | 2.41 × 107 | Kit | 21.0 | 4.98 × 106 | 0.21 | 9.60 × 106 | 39.8 | 5.56 × 106 | 23.1 | ||
Hot alkaline | 160.3 | 8.18 × 106 | 0.34 | 7.31 × 107 | 303 | 4.24 × 107 | 176 | ||||||||
10H-1 | 84.0 | 1.26 | ND | 1.15 | 2.91 × 107 | Kit | 2.2 | 1.96 × 106 | 0.07 | 9.96 × 105 | 3.4 | 5.77 × 105 | 2.0 | ||
Hot alkaline | 113.3 | 1.80 × 106 | 0.06 | 5.17 × 107 | 177 | 2.99 × 107 | 103 | ||||||||
20H-3 | 177.4 | 1.2 | ND | 1.01 | 8.70 × 106 | Kit | BDL | 1.22 × 106 | 0.14 | NAf | NA | NA | NA | ||
Hot alkaline | 71.7 | 1.08 × 106 | 0.12 | 3.27 × 107 | 376 | 1.90 × 107 | 218 | ||||||||
40H-10 | 364.0 | 0.82 | 0.04 | 1.99 | 1.21 × 105 | Kit | BDL | 3.76 × 104 | 0.31 | NA | NA | NA | NA | ||
Hot alkaline | 2.3 | 1.48 × 105 | 1.23 | 1.07 × 106 | 886 | 6.21 × 105 | 513 | ||||||||
IODP Expedition 316 | C0008A | 3H-6 | 22.0 | 0.37 | ND | 8.20 | 8.79 × 104 | Kit | BDL | 8.64 × 104 | 0.98 | NA | NA | NA | NA |
Hot alkaline | 19.4 | 1.25 × 105 | 1.42 | 8.85 × 106 | 10,067 | 5.13 × 106 | 5,836 |