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. 2014 Mar;80(6):1985–1994. doi: 10.1128/AEM.04150-13

TABLE 1.

Sample description, microbial cell abundance, and TOCa content

Expedition Drillling site Core Depth (mbsf) TOC (wt%) Sulfateb (mM) Methaneb (mM) Microbial cell abundance (cells/g sediment)c DNA extraction method DNA recovery (ng/g sediment) qPCR (copies/g sediment)d qPCR/cell abundance ratio Microbial abundance estimated from quantity of DNA with assumed avg genome size (kb) of:
2,000
3,800
CCN (cells/g sediment) Biomass coverage (%) CCN (cells/g sediment) Biomass coverage (%)
Chikyu shakedown cruise CK06-06 C9001C 2H-2 9.5 1.3 0.16 3.01 2.77 × 108 Kit 183.4 4.30 × 107 0.16 8.36 × 107 30.2 4.85 × 107 17.5
Hot alkaline 489.3 4.09 × 107 0.15 2.23 × 108 80.6 1.29 × 108 46.7
5H-1 35.4 0.81 NDe 1.68 2.41 × 107 Kit 21.0 4.98 × 106 0.21 9.60 × 106 39.8 5.56 × 106 23.1
Hot alkaline 160.3 8.18 × 106 0.34 7.31 × 107 303 4.24 × 107 176
10H-1 84.0 1.26 ND 1.15 2.91 × 107 Kit 2.2 1.96 × 106 0.07 9.96 × 105 3.4 5.77 × 105 2.0
Hot alkaline 113.3 1.80 × 106 0.06 5.17 × 107 177 2.99 × 107 103
20H-3 177.4 1.2 ND 1.01 8.70 × 106 Kit BDL 1.22 × 106 0.14 NAf NA NA NA
Hot alkaline 71.7 1.08 × 106 0.12 3.27 × 107 376 1.90 × 107 218
40H-10 364.0 0.82 0.04 1.99 1.21 × 105 Kit BDL 3.76 × 104 0.31 NA NA NA NA
Hot alkaline 2.3 1.48 × 105 1.23 1.07 × 106 886 6.21 × 105 513
IODP Expedition 316 C0008A 3H-6 22.0 0.37 ND 8.20 8.79 × 104 Kit BDL 8.64 × 104 0.98 NA NA NA NA
Hot alkaline 19.4 1.25 × 105 1.42 8.85 × 106 10,067 5.13 × 106 5,836
a

TOC, total organic carbon.

b

Data are from references 39 and 41.

c

Cell abundance was determined using sediment fixed on board.

d

Sums of copy numbers for bacteria and archaea are presented.

e

ND, not detected.

f

NA, not applicable.