TABLE 6.
Most frequent genomic patterns reported for swine influenza A viruses
| Virus straina | Reported yrb |
In silico genomic pattern by genec: |
|||||||
|---|---|---|---|---|---|---|---|---|---|
| PB2 | PB1 | PA | HA | NP | NA | M | NS | ||
| A/swine/Minnesota/SG239/2007 (H1N2) | 2007-2010 | 2 | 3 | 3 | H1-0 | 4 | N2-0 | 0 | 1 |
| A/swine/Wisconsin/1/1957 (H1N1) | 1957, 1961, 1966-2009 | 2 | 0 | 0 | H1-1 | 4 | N1-2 | 0 | 1 |
| A/swine/Iowa/H03G1/2003 (H1N1)d | 1995-2009 | 2 | 3 | 3 | H1-1 | 4 | N1-2 | 0 | 1 |
| A/swine/Minnesota/074A/2009 (H1N1) | 2009-2010 | 2 | 3 | 3 | H1-1 | 4 | N1-3 | 0 | 1 |
| A/swine/Ehime/1/1980 (H1N2) | 1980, 1996, 1999-2006 | 2 | 0 | 0 | H1-1 | 4 | N2-0 | 0 | 1 |
| A/swine/France/WVL4/1985 (H1N1) | 1985-2009 | 1 | 3 | 3 | H1-3 | 0 | N1-3 | 0 | 1 |
| A/swine/Iowa/H02AS8/2002 (H3N2) | 1990-2010 | 2 | 3 | 3 | H3-0 | 4 | N2-0 | 0 | 1 |
| A/swine/Colorado/1/1977 (H3N2) | 1977, 1981, 1997-2006 | 2 | 3 | 4 | H3-0 | 4 | N2-0 | 0 | 1 |
| A/swine/Fujian/F1/2001 (H5N1) | 2001-2007 | 1 | 3 | 3 | H5-0 | 0 | N1-3 | 0 | 1 |
a
Representative strains for the particular genomic pattern shown.
b
Years when strains with the same genomic pattern were reported in the NCBI Influenza Virus Resource.
c
Genomic pattern determined for the different virus strains based on in silico assays.
d
Viruses with the same genomic fingerprint found in the tested samples from Mexico are shown in bold type.