TABLE 3.
Topology analysis of deduced MG192 protein by different computational programs
| Program | Transmembrane regiona |
Surface orientationa |
|||
|---|---|---|---|---|---|
| TM1 | TM2 | TM3 | Inside | Outside | |
| TMpred | 14–30 | 302–325 | 939–965 | NAc | NA |
| TopPred | 11–31 | 306–326 | 947–967 | NA | NA |
| HMMTOP | 12–30 | NPb | 943–967 | NA | NA |
| TMHMM | 13–30 | NP | 939–961 | 1–12, 962–1053 | 31–938 |
| TOPCONS | 12–32 | NP | 946–966 | 1–11, 967–1052 | 33–945 |
| SCAMPI | 12–32 | NP | 947–967 | 1–11, 968–1052 | 33–946 |
Numbers represent the amino acid location of each protein segment based on the predicted MG192 amino acid sequence of the type strain G37 (GenBank accession no. NC_000908).
NP, not present.
NA, not available.