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. 2014 Mar;82(3):1326–1334. doi: 10.1128/IAI.01526-13

TABLE 3.

Topology analysis of deduced MG192 protein by different computational programs

Program Transmembrane regiona
Surface orientationa
TM1 TM2 TM3 Inside Outside
TMpred 14–30 302–325 939–965 NAc NA
TopPred 11–31 306–326 947–967 NA NA
HMMTOP 12–30 NPb 943–967 NA NA
TMHMM 13–30 NP 939–961 1–12, 962–1053 31–938
TOPCONS 12–32 NP 946–966 1–11, 967–1052 33–945
SCAMPI 12–32 NP 947–967 1–11, 968–1052 33–946
a

Numbers represent the amino acid location of each protein segment based on the predicted MG192 amino acid sequence of the type strain G37 (GenBank accession no. NC_000908).

b

NP, not present.

c

NA, not available.