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. 2004 Feb 27;4:3. doi: 10.1186/1472-6807-4-3

Table 5.

Examples of entry relationships in COMe

Fragment of ontology of PRX entities
5.1 complex protein PRX000001
graphic file with name 1472-6807-4-3-i1.gif IsA metalloprotein PRX000002
 graphic file with name 1472-6807-4-3-i1.gif IsA iron protein PRX000004
  graphic file with name 1472-6807-4-3-i1.gif IsA iron-sulphur protein PRX000007
   graphic file with name 1472-6807-4-3-i1.gif IsA Fe2S2 protein PRX000053
    graphic file with name 1472-6807-4-3-i1.gif IsA Fe2S2 ferredoxin PRX000058
     graphic file with name 1472-6807-4-3-i1.gif IsA plant and mammalian-type ferredoxin PRX000963
      graphic file with name 1472-6807-4-3-i1.gif IsA plant-type ferredoxin domain PRX000062
       graphic file with name 1472-6807-4-3-i1.gif IsA plant-type ferredoxin PRX000063
Fragment of ontology of BIM entities
5.2 Fe(por)(NE.His)* BIM000025
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His) BIM000007
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(NO) BIM000018
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(OH) BIM000019
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(O2) BIM000021
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(CO2) BIM000022
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(CO) BIM000023
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(O2)-BIM000024
graphic file with name 1472-6807-4-3-i1.gif IsA Fe(por)(NE.His)(CN) BIM000198
Fragment of ontology of MOL entities
5.3 FAD* MOL000041
graphic file with name 1472-6807-4-3-i1.gif IsA FAD MOL000039
graphic file with name 1472-6807-4-3-i1.gif IsA FADH2 MOL000040
graphic file with name 1472-6807-4-3-i1.gif IsA FADH. MOL000042
IsPartOf relationship
5.4 Zn(OE.Glu)2 [Fe(ND.His) k2-(OE,OE.Glu)] μ-(OE,OE.Glu)2 BIM000352
graphic file with name 1472-6807-4-3-i1.gif IsPartOf [OC-6] Fe(ND.His)(OE.Glu)2 k2-(OE,OE.Glu) BIM000353
graphic file with name 1472-6807-4-3-i1.gif IsPartOf [T-4] Zn(OE.Glu)4 BIM000354
IsBoundTo and IsPartOf relationships
5.5 pyridoxal 5'-phosphate protein PRX000808
graphic file with name 1472-6807-4-3-i1.gif IsBoundTo pyridoxal 5'-phosphate MOL000108
graphic file with name 1472-6807-4-3-i1.gif IsPartOf (C4A.Pxy)(NZ.Lys) BIM000270
IsPartOf and IsA relationships
5.6 bacterioferritin PRX000159
graphic file with name 1472-6807-4-3-i1.gif IsPartOf Fe(por)(SD.Met)2 BIM000015
graphic file with name 1472-6807-4-3-i1.gif IsA haem b bacterioferritin PRX001170
graphic file with name 1472-6807-4-3-i1.gif IsA Fe-coproporphyrin III bacterioferritin PRX001171
IsBoundTo and IsA relationships
5.7 cytochrome b PRX000153
graphic file with name 1472-6807-4-3-i1.gif IsBoundTo haem b MOL000013
graphic file with name 1472-6807-4-3-i1.gif IsA haem-bis-His cytochrome b PRX000674
graphic file with name 1472-6807-4-3-i1.gif IsA haem-His-Met cytochrome b PRX000675
graphic file with name 1472-6807-4-3-i1.gif IsA haem b bacterioferritin PRX001170