Table 1.
Number of genes associated with transcriptional phenotypes found by webQTL and the ECCO database using the default k=50 bp window
| Tissue | Genes | Mean expr | Max LRS | Total elements |
Total variable elements |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| polII | CTCF | H3K4me3 | H3K4me1 | H3K27ac | polII | CTCF | H3K4me3 | H3K4me1 | H3K27ac | ||||
| Liver | 28 | 11.33 (10.02–15.66) | 66.11 (41.5–129) | 29 | 15 | 23 | 52 | 81 | 12 | 6 | 12 | 25 | 39 |
| Kidney | 59 | 11.44 (10.07–15.33) | 66 (40.1–174) | 57 | 83 | 62 | 208 | 199 | 24 | 24 | 26 | 70 | 60 |
| Lung | 85 | 10.89 (10.03–12.95) | 70.2 (40.3–196) | 64 | 92 | 88 | 331 | 318 | 31 | 29 | 28 | 120 | 115 |
| Cortex | 33 | 11.4 (10.03–14.89) | 70.07 (43.3–131) | 30 | 33 | 22 | 153 | 45 | 13 | 18 | 11 | 63 | 15 |
| Cerebellum | 11 | 11.92 (10.13–14.31) | 60.2 (41.5–89.4) | 10 | 10 | 13 | 33 | 13 | 6 | 2 | 9 | 21 | 7 |
| Spleen | 35 | 10.81 (10.01–13.17) | 68.01 (41.7–182) | 22 | 23 | 30 | 63 | 78 | 10 | 7 | 13 | 32 | 28 |
Mean expr: the mean gene expression (normalized log2 expression values); Max LRS: maximum likelihood ratio statistics (LOD values / 4.61).