Table 3. Relative Populations of Different Regions (αR, β and αL) in the (ϕ/ψ) Distribution for Amino Acids Obtained from the Experimental Protein Structures (Dunbrack Library) and GBEMP Simulations of Dipeptides.
αR |
β |
αL |
||||
---|---|---|---|---|---|---|
amino acid | experiment | GBEMP | experiment | GBEMP | experiment | GBEMP |
Ala | 0.463 | 0.464 | 0.450 | 0.447 | 0.040 | 0.033 |
Arg | 0.568 | 0.654 | 0.389 | 0.271 | 0.022 | 0.049 |
Asn | 0.471 | 0.587 | 0.362 | 0.269 | 0.097 | 0.101 |
Asp | 0.522 | 0.651 | 0.366 | 0.296 | 0.044 | 0.034 |
Cys | 0.601 | 0.577 | 0.356 | 0.412 | 0.026 | 0.000 |
Gln | 0.601 | 0.588 | 0.356 | 0.325 | 0.026 | 0.050 |
Glu | 0.644 | 0.639 | 0.324 | 0.326 | 0.018 | 0.022 |
His | 0.476 | 0.617 | 0.454 | 0.382 | 0.033 | 0.000 |
Ile | 0.429 | 0.380 | 0.564 | 0.619 | 0.001 | 0.000 |
Leu | 0.567 | 0.570 | 0.413 | 0.388 | 0.007 | 0.014 |
Lys | 0.581 | 0.589 | 0.373 | 0.410 | 0.029 | 0.000 |
Met | 0.560 | 0.715 | 0.408 | 0.284 | 0.013 | 0.000 |
Phe | 0.450 | 0.475 | 0.512 | 0.478 | 0.015 | 0.046 |
Ser | 0.468 | 0.462 | 0.484 | 0.503 | 0.016 | 0.000 |
Thr | 0.455 | 0.485 | 0.512 | 0.501 | 0.003 | 0.010 |
Trp | 0.489 | 0.589 | 0.475 | 0.368 | 0.012 | 0.004 |
Tyr | 0.452 | 0.563 | 0.506 | 0.432 | 0.016 | 0.000 |
Val | 0.378 | 0.355 | 0.614 | 0.618 | 0.001 | 0.013 |