Table 1. X-ray data collection and refinement statistics.
PQB (Bragg dark) | PQB (Laue dark) |
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Data collection* | ||||
Wavelength, ņ | 0.9 | 0.9-1.4 | ||
Data range, Å | 42-2.9 | 42-2.9 | ||
Observations | 445,487 | 373,404 | 366,170 | |
Unique reflections | 62,939 | 52,845 | 49,977 | |
Redundancy‡ | 7.1 | 7.1 | 6.5 | |
Rsym (%) | 8.7 (44.7) | 8.1 (12.1) | 9.8 (12.8) | |
Resolution, Å | 2.9 | 3.27 | ||
Completeness§ (%) | 99.5 (95) | 88.2 (62.3) | 83.1 (50.8) | |
I/σ¶ | 23.0 (3.8) | 16.0 (1.9) | 12.4 (1.5) | |
Refinement∥ | ||||
No. of reflections used | 61,245 | 45,590 | 41,648 | |
No. of atoms in model | 10,136 | 10,113 | 10,113 | |
Rcryst (%) | 20.1 | 25.2 | 27.1 | |
Rfree** (%) | 22.8 | 27.1 | 29.6 | |
rmsd bond length, Å | 0.008 | 0.009 | 0.010 | |
rmsd bond angles, ° | 1.5 | 1.6 | 1.6 | |
RQAQ†† | 0.55 | — | — | |
RQBQ†† | 0.35 | — | — |
Crystal dimensions (μm): monochromatic, 500 × 500 × 800; Laue, 150 × 300 × 600; 250 × 350 × 800; 250 × 350 × 700; 100 × 250 × 600; 150 × 150 × 300. Space group: P43212. Unit cell dimensions: 223.5 × 223.5 × 112.5 Å.
Wavelength for Laue data collection corresponds to that used during scaling.
Laue data redundancy is calculated from single reflections used in scaling whereas completeness is calculated following harmonic deconvolution.
Completeness for the Laue datasets reported by for the restricted resolution range 42-3.27 (3.44-3.27): for the resolution range 42-2.9 (3.0-2.9) Å the completeness is 71.6% (19.5%) for the dark dataset and 65.3% (13.1%) for the light dataset.
I/σ for the Laue datasets estimated from F and σ(F), using the relations I = F2, σ(I)/I = 2σ(F)/F. At the resolution limit (3.44-3.27 Å), the values of I/σ are 4.2 and 3.2 for the dark and light datasets, respectively.
Monochromatic refinement statistics are for the final model including QB. Laue refinement statistics are from a single round of simulated annealing and minimization starting from the refined monochromatic model, omitting QB.
Rfree calculated from 10% of dataset formonochromatic refinement, from 5% of dataset for Laue refinement.
Relative Quinone Quality factor, see ref. 21.