Table 5. RNA editing sites in the Deschampsia antarctica chloroplast genome.

Gene	length	location from start	codonchange	amino acid change	Nucleotidechange	Number of reads*
matK	1536	1258	CAU>UAU	His>Tyr	C>U	U;11 (28.9%), C; 27 (71.1%)
rpoB	3231	398	CGC>CAC	Arg>His	G>A	A:4 (25%), G:10 (62.5%), U:1(6.3%),
rpoC1	2031	603	GAA-GAU	Glu>Asp	A>U	A:19 (74.1%), U:7 (25.9%)
rpoC1	2031	612	GCG-GCA	Ala->Ala	G>A	A:7 (24.1%), G:22 (75.9%)
rpoC2	4407	650	AUA>AGA	Ile>Arg	U>G	G:2 (20.0%. U:8 (80%)
atpA	1524	334	UUG>CUG	Leu>Leu	U>C	C:13 (43.3%), U:17(56.7%)
atpA	1524	367	AUA>GUA	Ile>Val	A>G	A:23 (76.7%), G:7(23.3%)
atpA	1524	933	GAA>GAC	Glu>Asp	A>C	A:41(54.7%), C:34(45.3%)
atpA	1524	1148	UCA>UUA	Ser>Leu	C>U	C:2(2.9%), U:66 (97.1%)
ycf3	513	44	UCC>UUC	Ser>Phe	C>U	U:19 (100%)
rps4	606	588	UAU>UAA	Tyr>stop	U>A	A:55 (66.3%),U:28 (33.7%)
rps4	606	580	GUG>CUG	Val>Leu	G>C	G:31(36%), C:55 (64%)
rps4	606	370	AAU>GAU	Asn>Asp	A>G	G:3 (42.9%), A:4 (57.1%)
ndhJ3′ UTR			AAU>AAC	Asn>Asn	A>C	A:4 (30.8%), C: 9 (69.2%)
ndhJ	480	480	UGA>UGG	stop>Trp	A>G	A:4 (30.8%), G: 9 (64.3%)
ndhK	738	125	CCA>CUA	Pro>Leu	C>U	C:2(9.5%), U:19 (90.5%)
ndhC	363	13	CAC>UAC	His>Tyr	C>U	C:3(50%). U:3 (50%)
psbL	117	111	UUC>UUU	Phe>Phe	C>U	C:2 (15.4%), U: 10 (76.9%), G: 1(7.7%)
petL	96	56	CCA>CUA	Pro>Leu	C>U	U:2 (100%)
rpl20	360	308	UCA>UUA	Ser>Leu	C>U	C:5 (45.5%), U:6 (54.5%)
psbB	5127	867	AGC>AGU	Ser>Ser	C>U	C:25 (83.3%), U:5 (16.7%)
petB	648	611	CCA>CUA	Pro>Leu	C>U	U:19 (100%)
rpoA	1026	527	UCC>UUC	Ser>Phe	C>U	C:2 (18.2%), U:9 (81.8%)
rps8	411	182	UCA>UUA	Ser>Leu	C>U	C:1 (7.7%), U:12 (92.3%)
rpl16	411	250	GGC>ACG	Gly>Ser	G>A	G:2 (33.3%), A:4 (66.7%)
rps3	720	30	UUC>UUU	Phe>Phe	C>U	C:6 (30%), U:14 (70%)
ndhD	1503	878	UCA>UUA	Ser>Leu	C>U	C:1 (9.1%), U:10 (90.9%)
ndhG	531	347	CCA>CUA	Pro>Leu	C>U	U: 29 (100%)
ndhA	1089	722	GCA>GUA	Ala>Val	C>U	C: 9 (81.8%), U: 2 (18.2%)
ndhA	1089	474	UCA>UUA	Ser>Leu	C>U	C: 2 (10.5%), U: 17 (89.5%)

*indicates the number of reads with an alternate base and the number of reads with the same base as the reference.