Table 6. Target sequences for genotyping by pyrosequencing of MDV and H7N9 viruses.
Virus | Gene | Nucleotides | Sequence 5′ ->3′ |
MDV | NA | 21–35 | AATAACAATTGGCTC* |
A/Anhui/1/2013 | NA | 21–35 | TC TATGCACTTCAGC |
MDV | M | 840–855 | A TTATCGCTTCTTTAA |
A/Anhui/1/2013 | M | 840–855 | TTT ATCGTCGTTTTAA |
MDV | NS | 92–104 | CGATCAAGGAATG** |
A/Anhui/1/2013 | NS | 92–104 | CGGTCTAGAAATG** |
MDV | NP | 1287–1301 | C ACTGGGAATGCAGA |
A/Anhui/1/2013 | NP | 1287–1301 | T ACAGGAAATACTGA |
MDV | PA | 546–561 | GAGGCCTCTGCTAGCC** |
A/Anhui/1/2013 | PA | 546–561 | TAGACCCCTGCTGGCC** |
MDV | PB1 | 250–266 | AGGACGCAGTCTGTTTG** |
A/Anhui/1/2013 | PB1 | 250–266 | AATACACAATCCGTTTG** |
MDV | PB2 | 117–133 | GTGACGGGTTCTTTTCC** |
A/Anhui/1/2013 | PB2 | 117–133 | GGGCAGGATTCTTCTCC** |
*Signature nucleotides are shown in bold.
**The sequence is of the complementary strand.