Table 1. The class and availability of biclustering methods.
Bicluster Method | Class | Since | Availability | Parameters |
ACV [50] | CMB | 2007 | - | , |
Bayesian Plaid [51], [52] | PGM | 2008 | C [52] | |
Bimax [11] | VMB | 2006 | Java [53] | |
BiMine [46] | CMB | 2009 | Java | , |
CC [7] | CMB | 2000 | R [54], Java [53] | |
CMonkey [9] | PGM | 2006 | R | |
CTWC [19] | TWC | 2000 | MATLAB | |
DCC [55], [56] | TWC | 2002 | - | - |
FABIA and FABIAS [21] | PGM | 2010 | R | |
FLOC [14] | CMB | 2005 | R | |
GEMS [57], [58] | CGS | 2004 | Web, C | |
Gibbs biclustering [12] | PGM | 2003 | - | - |
ISA [43], [44] | TWC | 2002 | Java [53] | |
ITWC [20] | TWC | 2001 | - | - |
OP-Clustering [59], [60] | CMB | 2003 | - | - |
OPSM [40] | CMB | 2003 | Java [53], C# | |
Plaid [41], [42] | PGM | 2002 | R [54], web | |
ProBic [22] | PGM | 2009 | - | - |
QUBIC [45] | VMB | 2009 | C | , , |
R/MSBE [30] | VMB | 2006 | Java | |
SAMBA [13] | PGM | 2002 | Java [61] | |
Spectral [62] | VMB | 2003 | R [54] | |
TreeBic [49] | PGM | 2010 | C | |
UBCLUST [63] | CMB | 2006 | Java | |
XMOTIF [15] | VMB | 2003 | R [54], C, Java [53] | |
ZBDD [18] | VMB | 2005 | - | |
-clustering [16] | VMB | 1972 | - | |
-Pclustering [17] | VMB | 2002 | - | |
-jk [64] | VMB | 2000 | - | , |
The notations used for the methods classes are stated in the text. The parameters used by the biclustering methods are described in Table 4. The methods that are shown in bold texts were evaluated in our study.