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. 2014 Mar 20;9(3):e90801. doi: 10.1371/journal.pone.0090801

Table 2. The biclustering methods specifications and testing data types.

Bicluster Method Method specifications Tested data
ACV GSOVL Synthetic, yeast
Bayesian Plaid GSOVL, MCMC, BAYES Synthetic, yeast
Bimax GSOVL, DISC Synthetic, yeast
BiMine GSOVL, TREE Synthetic, yeast
CC GSOVL Synthetic, Human, yeast
CMonkey GSOVL, MCMC, MOTIF, TMV Synthetic, yeast
CTWC GSOVL,SIMA Human
DCC NOVL, VECOS Human
FABIA and FABIAS GSOVL, EM, BAYES, SVD Synthetic, Human
FLOC GSOVL, TMV Synthetic, Human
GEMS GSOVL, MCMC Synthetic, Human
Gibbs biclustering GSOVL, DISC, MCMC, BAYES Synthetic, Human
ISA GSOVL Synthetic, yeast
ITWC SOVL, VECOS Human
OP-Clustering GSOVL, TREE Yeast, Human
OPSM GSOVL, DISC Synthetic, yeast [43], Human
Plaid GSOVL, FUZZY [31] Synthetic, Human, yeast
ProBic GSOVL, EM, BAYES, TMV Synthetic, yeast
QUBIC GSOVL Synthetic, yeast, e. coli, Human
R/MSBE GSOVL Synthetic, yeast
SAMBA GSOVL, DISC Yeast, Human
Spectral NOVL,SVD Human
TreeBic GSOVL, MCMC, BAYES, TREE Human
UBCLUST GSOVL, DISC, MCMC, SIMA Synthetic, yeast
XMOTIF GSOVL Synthetic [43], Human, yeast [43]
ZBDD GSOVL Synthetic, yeast
Inline graphic -clustering NOVL Synthetic
Inline graphic -Pclustering GSOVL Synthetic, yeast
Inline graphic -jk GSOVL Synthetics, Human

The methods specifications are described in Table 3. Although the original FLOC algorithm is tolerant to missing values (TMV), the R implementation available in BicARE (V 1.2.0) of the Bioconductor package does not accept missing values in input data. Note that all the tested data with missing citations were studied by the developers of the algorithms to which they have been assigned. For the citation of the algorithms see Table 1.