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. 2014 Mar 20;9(3):e90801. doi: 10.1371/journal.pone.0090801

Table 4. Different types of parameters used by the biclustering methods.

Parameter Parameter specification
Inline graphic the number of generated biclusters either per iteration or globally
Inline graphic the threshold for biclustering optimization criteria
Inline graphic the threshold for the number of iterations
Inline graphic the probability of including/excluding a gene or a sample during the clustering process
Inline graphic the threshold for the size of the biclusters
Inline graphic the threshold for the number of gene (or respectively sample) operations in one iteration
Inline graphic the number of genes and/or samples in the initial bicluster seeds)
Inline graphic the overlap threshold for the obtained biclusters
Inline graphic model-based parameters, e.g., parameters for prior distributions, or tree depth

The operations allowed when defining parameter Inline graphic are comparisons, additions, removals, and splits for genes (or respectively samples).