Table 4. Different types of parameters used by the biclustering methods.
Parameter | Parameter specification |
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the number of generated biclusters either per iteration or globally |
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the threshold for biclustering optimization criteria |
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the threshold for the number of iterations |
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the probability of including/excluding a gene or a sample during the clustering process |
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the threshold for the size of the biclusters |
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the threshold for the number of gene (or respectively sample) operations in one iteration |
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the number of genes and/or samples in the initial bicluster seeds) |
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the overlap threshold for the obtained biclusters |
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model-based parameters, e.g., parameters for prior distributions, or tree depth |
The operations allowed when defining parameter are comparisons, additions, removals, and splits for genes (or respectively samples).