. Author manuscript; available in PMC: 2014 Mar 21.

Published in final edited form as: J Fish Dis. 2013 Jan 24;36(8):721–733. doi: 10.1111/jfd.12073

Table 3.

Description of CyHV-3 proteins identified. Prosite (Sigrist et al. 2010) and Simple Modular Architect Research Tool (SMART) by Letunic et al. (2012) were used to identify important domains in the 5 CyHV-3 proteins identified in this study. Amino acid number is referred to by the abbreviation aa

Accession no.	Protein description	Protein length	Domain of interest	Spanning region
(a) Glycoprotein and 0RF150 modelled using Prosite
gi\|129560573	Glycoprotein	897 aa	Putative AMP binding	173-184 aa
gi\|129560669	0RF150	628 aa	Zinc finger Ring-type	24-66 aa
(b) The remaining three proteins, 0RF22, 0RF23 and 0RF92 (major capsid protein), modelled by SMART
gi\|65306693	Major capsid protein	1268 aa	MHC II beta	461-513 aa
gi\|131840052	0RF22	588 aa	Transmembrane domain	22-217 aa
gi\|131840053	0RF23	335 aa	Interleukin-10 (IL-10)	24-163 aa