Table 4. Comparison of various modalities with gene expression in terms of proportion of datasets/tasks where one modality performs at least as good as the other.
| Number of datasets/tasks | Comparison of proportions | ||||
|---|---|---|---|---|---|
| Modality | where this modality was measured | where this modality had performance ≥ gene expression | where gene expression had performance ≥ this modality | p-value | p-value adjusted for multiple comp. |
| Clinical | 47 | 21 | <45 | <10−5 | <10−5 |
| Protein expression | 27 | 24 | <25 | 0.6387 | 0.8516 |
| Somatic Mutations | 16 | 11 | <16 | 0.0149 | 0.0298 |
| DNA Methylation | 27 | 25 | <27 | 0.1495 | 0.2393 |
| miRNA Expression | 14 | 14 | = 14 | 1 | 1 |
| Copy Number | 3 | 0 | <3 | 0.0143 | 0.0298 |
| Tumor Imaging | 1 | 1 | = 1 | 1 | 1 |
| GWAS | 16 | 1 | <16 | <10−5 | <10−5 |