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. 2012 Oct 23;2:e201209009. doi: 10.5936/csbj.201209009

Table 1.

Examples rate enhancements and specificities of computationally designed enzymes.a

Name Reaction logkcatkuncat logkcatKM →log KTS Ref.
P7D2 Ester hydrolysis 2.26 0.43 6.03 39
G4-DFtet Phenol oxidation ≈3b 1.42 6.08 18
RA61 Retro-Aldol 4.36 -0.15 8.04 19
KE07 Kemp Elimination 4.19 1.11 7.04 20
→KE07*c Kemp Elimination 6.07 3.40 9.34 20
KE70 Kemp Elimination 5.08 2.10 8.04 46
→KE70*c Kemp Elimination 6.63 4.75 10.7 46
HG-3d Kemp Elimination 5.77 2.63 8.56 79
DA_20_00 Diels-Aldere 0.61 -1.26 3.90 21
→DA_20_10f Diels-Aldere 1.93 0.73 5.90 21,83
→CE6 Diels-Aldere 1.96 1.94 7.11 83
a

A ’ →’ indicates the design has been developed from the closest design above.

b

Only an approximate rate enhancement was reported by the authors.

c

The 'R7 10/11G’ variant of KE07,[20] and 'R6 4/8B’ variant of KE70,[46] evolved by directed evolution and containing 8 and 14 mutations compared to their respective progenitor.

d

Refined in three generations using a combination of small-molecule placement,[11] MD and experimental techniques.

e

A bimolecular reaction, reported values therefore contain kcat/(KM1KM2).

f

Evolved from DA_20_00 by rational design and contains 6 mutations with respect to the progenitor

g

Evolved from DA_20_10 by exchanging an unstructured loop on the fringe of the active site to a helix-turn-helix motif that better encapsulates the substrates. The design was found by employing the community of FoldIt[16] players.