Table 1.
Nucleotide sequence pairwise similarity (%) of HPV102 and HPV106 ORFs and URRs with related HPV types
| Novel types | Pairwise similarity of each ORF and the URR (%) |
L1:E1 ratio | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Related types (species) | E6 | E7 | E1 | E2 | E4 | L2 | L1 | URR | |
| HPV102 | |||||||||
| HPV83 (α3) | 85.0 | 87.3 | 85.0 | 84.9 | 83.7 | 78.8 | 84.1 | 71.9 | 0.989 |
| HPV89 (α3) | 72.7 | 72.0 | 78.3 | 74.2 | 73.2 | 68.4 | 74.8 | 64.4 | 0.955 |
| HPV61 (α3) | 66.7 | 73.4 | 75.3 | 73.3 | 73.9 | 68.7 | 75.0 | 64.7 | 0.996 |
| HPV72 (α3) | 69.8 | 71.2 | 76.2 | 73.8 | 74.3 | 69.9 | 74.7 | 66.9 | 0.980 |
| HPV106 | |||||||||
| HPV90 (α15) | 78.7 | 85.4 | 87.3 | 87.0 | 85.5 | 80.4 | 83.5 | 73.6 | 0.956 |
| HPV71 (α15) | 68.2 | 78.7 | 79.2 | 76.8 | 74.3 | 72.2 | 75.2 | 60.8 | 0.949 |