Table 1.
Parameters | Default | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
w 1 | Exp. | Exp. | Exp. | Exp. | Exp. | Exp. | Exp. | Laplace | Gauss | Unif. | Exp. | Laplace | Gauss |
w 2 | Unif. | Unif. | Unif. | Unif. | Unif. | Unif. | Unif. | Unif. | Unif. | Unif. | 1 | 1 | 1 |
Window length | 20 | 15 | 10 | 5 | 1 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 |
Na.replace | Truea | True | True | True | True | Nab | Falsec | True | True | True | True | True | True |
Li and Jiang’s score, threshold by equilibrium sampling | |||||||||||||
Nb alleles | 4.25 | 4.89 | 5.52 | 5.91 | 3.70 | 4.62 | 4.68 | 4.50 | 4.43 | 4.15 | 4.66 | 4.70 | 4.68 |
Nb changes | 138 | 155 | 135 | 143 | 175 | 131 | 133 | 143 | 146 | 144 | 163 | 154 | 162 |
Extended Li and Jiang’s score, threshold by equilibrium sampling | |||||||||||||
Nb alleles | 4.14 | 4.52 | 4.22 | 4.55 | 4.17 | 4.50 | 4.51 | 4.40 | 4.33 | 4.04 | 4.61 | 4.64 | 4.64 |
Nb changes | 138 | 168 | 177 | 220 | 198 | 127 | 130 | 148 | 143 | 140 | 159 | 152 | 154 |
aComparison of alleles involving missing data gives always a true result
bComparison of alleles involving missing data gives a non-assigned result
cComparison of alleles involving missing data gives a false result