Table 1.
New and updated genome assemblies added to the Genome Browser since September 2012
| Common name | Scientific name | Sequencing center | UCSC ID | Seq. ctr ID |
|---|---|---|---|---|
| Primates | ||||
| Baboon | Papio hamadryas | Baylor College of Medicine HGSC | papHam1 | Pham_1.0 |
| Baboon | Papio anubis | Baylor College of Medicine HGSC | papAnu2 | Panu_2.0 |
| Bushbaby | Otolemur garnettii | Broad Institute | otoGar3 | OtoGar3 |
| Chimpanzee | Pan troglodytes | Chimpanzee Sequencing and Analysis Consortium | panTro4 | Build 2.1.4 |
| Gibbon | Nomascus leucogenys | Gibbon Genome Sequencing Consortium | nomLeu2 | Nleu1.1 |
| nomLeu3 | Nleu3.0 | |||
| Mouse lemur | Microcebus murinus | Broad Institute | micMur1 | MicMur1.0 |
| Rhesus macaque | Macaca mulatta | Beijing Genomics Institute | rheMac3 | CR_1.0 |
| Squirrel monkey | Saimiri boliviensis | Broad Institute | saiBol1 | SaiBol1.0 |
| Tarsier | Tarsius syrichta | Broad Institute | tarSyr1 | Tarsyr1.0 |
| Other mammals | ||||
| Alpaca | Vicugna pacos | Broad Institute | vicPac1 | VicPac1.0 |
| vicPac2 | VicPac2.0 | |||
| Armadillo | Dasypus novemcinctus | Baylor College of Medicine HGSC | dasNov3 | DasNov3 |
| Cat | Felis catus | International Cat Genome Sequencing Consortium | felCat5 | Felis_catus-6.2 |
| Dolphin | Tursiops truncatus | Baylor College of Medicine HGSC | turTru2 | Ttru_1.4 |
| Ferret | Mustela putorius furo | Ferret Genome Sequencing Consortium | musFur1 | MusPutFur1.0 |
| Hedgehog | Erinaceus europaeus | Broad Institute | eriEur1 | Draft_v1 |
| Kangaroo rat | Dipodomys ordii | Baylor College of Medicine HGSC, Broad Institute | dipOrd1 | DipOrd1.0 |
| Manatee | Trichechus manatus latirostris | Broad Institute | triMan1 | TriManLat1.0 |
| Megabat | Pteropus vampyrus | Broad Institute | pteVam1 | PteVap1.0 |
| Naked mole rat | Heterocephalus glaber | Broad Institute | hetGla2 | HetGla_female_1.0 |
| Pig | Sus scrofa | Swine Genome Sequencing Consortium | susScr3 | Sscrofa10.2 |
| Pika | Ochotona princeps | Broad Institute | ochPri2 | OchPri2 |
| Rock hyrax | Procavia capensis | Baylor College of Medicine HGSC | proCap1 | Procap1.0 |
| Shrew | Sorex araneus | Broad Institute | sorAra1 | SorAra1.0 |
| Sloth | Choloepus hoffmanni | Broad Institute | choHof1 | ChoHof1.0 |
| Southern white rhinoceros | Ceratotherium simum simum | Broad Institute | cerSim1 | cerSimSim1.0 |
| Squirrel | Spermophilus tridecemlineatus | Broad Institute | speTri2 | SpeTri2.0 |
| Tree shrew | Tupaia belangeri | Broad Institute | tupBel1 | Tupbel1.0 |
| Other vertebrates | ||||
| American alligator | Alligator mississippiensis | Int’l Crocodilian Genomes Working Group | allMis1 | allMis0.2 |
| Atlantic cod | Gadus morhua | Genofisk | gadMor1 | GadMor_May2010 |
| Budgerigar | Melopsittacus undulatus | Genome Institute at Wash. Univ. St. Louis | melUnd1 | v6.3 |
| Coelacanth | Latimeria chalumnae | Broad Institute | latCha1 | LatCha1 |
| Lamprey | Petromyzon marinus | Genome Institute at Wash. Univ. St. Louis | petMar2 | WUGSC 7.0 |
| Nile tilapia | Oreochromis niloticus | Broad Institute | oreNil2 | OreNil1.1 |
The ‘UCSC ID’ column shows the Genome Browser database designation for the genome assembly.