Table 2.
New and updated annotation data sets added to the Genome Browser between September 2012 and September 2013
| Annotation track | Assembly |
|---|---|
| Human genome | |
| 1000 Genomes Phase 1 Integrated Variant Calls | hg19 |
| 1000 Genomes Phase 1 Paired-end Accessible Regions | hg19 |
| Affymetrix CytoScan HD Array | hg19 |
| Coriell Cell Line Copy Number Variants | hg19 |
| Denisova: Modern Human Derived, Sequence Reads, Variant Calls, Variant Calls from 11 Modern Human Genome Sequences | hg19 |
| DGV: Structural Variation | hg18-19 |
| DNaseI Hypersensitivity Uniform Peaks— ENCODE/Analysis | hg19 |
| ENCODE Regulation: DNaseI HS Clusters, Transaction Factor ChiP-seq Clusters | hg19 |
| GENCODE Genes v14, v17 | hg19 |
| GeneReviews | hg18-19 |
| GRCh37 Patch 10 | hg19 |
| GWAS Catalog of Published Genome-Wide Association Studies | hg18-19 |
| Human Gene Mutation Database (HGMD) | hg19 |
| Leiden Open Variation Database (LOVD) | hg19 |
| Pfam domains in UCSC Genes | hg19 |
| Proteogenomics and GENCODE Mapping—ENCODE | hg19 |
| qPCR Primers | hg19 |
| Reactome v41 | hg17-19 |
| Retroposed Genes | hg19 |
| SNPs (Build 137): All SNPs, Common SNPs, Flagged SNPs, Mult. SNPs | hg19 |
| SNPs (Build 138): All SNPs, Common SNPs, Flagged SNPs, Mult. SNPs | hg19 |
| Transcription Factor ChIP-seq Uniform Peaks— ENCODE/Analysis | hg19 |
| UCSC Genes | hg19 |
| UniProt Mutations | hg19 |
| Mouse genome | |
| 60-species Conservation | mm10 |
| GRC Incident Database | mm10 |
| GRCm38 Patch Release 1 | mm10 |
| Mouse strain variants | mm10 |
| qPCR Primers | mm10 |
| Reactome v.41 | mm8-9 |
| SNPs (Build 137) | mm10 |
| UCSC Genes | mm10 |
| Cow genome | |
| NumtS Nuclear Mitochondrial Sequences | bosTau6 |
| Pig genome | |
| NumtS Nuclear Mitochondrial Sequences | susScr2 |
| Multiple genomes | |
| Ensembl Genes | Many |
| Human proteins | Many |
| Publications track | Many |