Table 1.
Data content of rSNPBase as of 1 August 2013
| Data type | Data description | Data statistics |
|---|---|---|
| rSNPs | Totala | 22 846 898 |
| Involved in proximal transcriptional regulation | 7 081 726 | |
| Involved in distal transcriptional regulation | 9 720 393 | |
| Involved in RBP-mediated post-transcriptional regulation | 15 782 798 | |
| Involved in miRNA-mediated post-transcriptional regulation | 928 | |
| LD proxies (non-rSNPs)b | 2 281 874 | |
| rSNP-related genes | 56 869 | |
| Spatio-temporal labels | Cell lines | 363 |
| Tissues | 74 | |
| Developmental stages | 5 | |
| eQTL labels | SNP-gene pairs | 2 428 727 |
aAn rSNP may be involved in multiple types of regulation.
bIn rSNPBase, SNPs (both rSNP and non-rSNP) in strong LD (r2 > 0.8) with an rSNP are defined as LD proxies. Here we only count the number of non-rSNPs of the LD proxies.