Table 1.
List of available summary statistics
| Method family | Method | Reference | Window size | Rank scores tail |
|---|---|---|---|---|
| Allele frequency spectrum | Tajima’s D | Tajima (3) | 30 kb | Lower |
| CLR | Nielsen et al. (4) | Variable size | Upper | |
| Fay and Wu’s H | Fay and Wu (5) | 30 kb | Lower | |
| Fu and Li’s F* | Fu and Li (6) | 30 kb | Lower | |
| Fu and Li’s D* | Fu and Li (6) | 30 kb | Lower | |
| R2 | Ramos-Onsins and Rozas (7) | 30 kb | Lower | |
| Linkage disequilibrium structure | XP-EHH | modified from Sabeti et al. (8) | SNP-specific | Upper |
| AiHH | modified from Voight et al. (9) | SNP-specific | Upper | |
| his | modified from Voight et al. (9) | SNP-specific | Upper | |
| EHH_average | modified from Sabeti et al. (10) | 30 kb | Upper | |
| EHH_max | modified from Sabeti et al. (10) | 30 kb | Upper | |
| Wall’s B | Wall (11) | 30 kb | Upper | |
| Wall’s Q | Wall (12) | 30 kb | Upper | |
| Fu’s F | Fu (13) | 30 kb | Lower | |
| Dh | Nei (14) | 30 kb | Upper | |
| Za | Rozas et al. (15) | 30 kb | Upper | |
| ZnS | Kelly (16) | 30 kb | Upper | |
| ZZ | Rozas et al. (15) | 30 kb | Upper | |
| Population differentiation | Fst (global and pairwise) | Weir and Cockerham (17) | SNP-specific | Upper |
| ΔDAF (standard and absolute) | Hofer et al. (18) | SNP-specific | Upper | |
| XP-CLR | Chen et al. (19) | 0.1 cM (maximum window) | Upper | |
| Descriptive statistics | Segregating sites | 30 kb | NA | |
| Singletons | 30 kb | NA | ||
| pi (nucleotide diversity) | Nei and Li (20) | 30 kb | NA | |
| DAF (derived allele frequency) | SNP-specific | NA | ||
| MAF (minor allele frequency) | SNP-specific | NA |