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Feature comparison of FunCoup 2.0 and FunCoup 3.0
| Bayesian integration | FunCoup 2.0 naïve | FunCoup 3.0 redundancy weighted |
|---|---|---|
| TF targets | Regulogs | ENCODE, modENCODE, YEASTRACT |
| mRNA correlation | Pearson | Spearman |
| Genome versions | Data driven | Ensembl 64 |
| PPI data | IntAct | iRefIndex |
| PPI scoring | Per experiment | Per publication |
| PHP scoring | Each signature separately | Tree-based |
