Table 1.
Resources integrated into PortEco search
| Resource | Data | Maintained by PortEco |
|---|---|---|
| BioModels (5) | Quantitative models for simulating metabolic and regulatory systems | No |
| EcoCyc (1) | Genes, pathways, operons | No (sister site) |
| EcoGene (6) | Genes | No |
| EcoliWiki (3) | Genes, strains, alleles | Yes |
| GenExpDB (http://genexpdb.ou.edu) | Gene expression profiles | No |
| NCBI (7) | Genes | No |
| PANTHER (8) | Gene families and orthologs of E. coli genes | Yes |
| Pathway Commons (9) | Pathways and protein interactions | No |
| Protein Data Bank (10) | Protein 3D structures (experimental) | No |
| Protein Model Portal (11) | Protein 3D structures (both experimental and models) | No |
| PortEco GBrowse | Gene location, ChIP, ribosome profiling, RNA-seq | Yes |
| PortEco Gene Expression | Gene expression profiles; expression conditions | Yes |
| PortEco Phenotype | Knockout phenotype data | Yes |
| PortEco Textpresso | Publications (full text search) | Yes |
| STRING (12) | Predicted interacting genes | No |
| UniProt (13) | Proteins | No |