Table 2. Targeting of SIcall and control gene sets by microRNA (miRNA).
| miRNA/miRNA family |
% Of genes targeted |
Set 2 vs NC |
|||
|---|---|---|---|---|---|
| Set 1 | Set 2 | NC | X2 | P | |
| miR-29abcd | 40 | 11 | 9 | 0.71 | 0.399 |
| miR-518a-5p/520d-5p/524-5p | 35 | 14 | 18 | 1.21 | 0.272 |
| miR-182 | 30 | 22 | 10 | 16.81 | 0.00004 |
| miR-3148 | 30 | 12 | 10 | 0.29 | 0.593 |
| miR-548ah/3609 | 30 | 9 | 8 | 0.15 | 0.701 |
| miR-548c-3p | 25 | 14 | 18 | 1.65 | 0.199 |
| miR-677/4276 | 30 | 5 | 4 | 0.30 | 0.585 |
| miR-1326/4766-5p | 25 | 5 | 6 | 0.14 | 0.705 |
| miR-15abc/16/16abc/195/322/424/497/1907 | 25 | 9 | 11 | 0.39 | 0.534 |
| miR-181abcd/4262 | 25 | 10 | 12 | 0.26 | 0.609 |
| miR-30abcdef/30abe-5p/384-5p | 25 | 21 | 13 | 5.90 | 0.015 |
| miR-3613-3p | 25 | 9 | 12 | 0.72 | 0.395 |
| miR-3714 | 25 | 16 | 11 | 2.71 | 0.100 |
| miR-4282 | 25 | 13 | 13 | 0.03 | 0.856 |
| miR-4698 | 30 | 9 | 11 | 0.34 | 0.559 |
| miR-4796-3p | 25 | 6 | 6 | 0.02 | 0.903 |
| miR-513a-5p | 25 | 8 | 8 | 0.02 | 0.890 |
| miR-607 | 25 | 18 | 13 | 3.09 | 0.079 |
| miR-9/9ab | 25 | 13 | 11 | 0.33 | 0.566 |
| miR-96/507/1271 | 25 | 10 | 10 | 0.03 | 0.872 |
Listed are all miRNAs/miRNA families targeting at least five (25%) of Set 1 genes. The % of target genes among Set 1 genes (n=20), Set 2 genes (n=117) and non-called genes (NC, transcripts expressing above background, but not identified by significantly involved calls (SIcall, n=6055)) are given. For each miRNA, the numbers of target genes vs nontarget genes in Set 2 vs NC genes were compared using χ2 tests, with P-values shown in the rightmost column.