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. Author manuscript; available in PMC: 2014 Jul 30.
Published in final edited form as: Nature. 2013 Dec 15;505(7485):701–705. doi: 10.1038/nature12894

Extended Data Table 1. Sequences of functional structure mutations.

5’-3’ mRNA structure sequences are listed. Lowercase letters correspond to non-paired bases, found in bulges or loops within the stem. Mutated bases are underlined.

UTR Stem Sequence
(5’ to 3’)
PMA1 Wildtype TTTTTTCTcTCTTTTatacacacattcAAAAGAaAGAAAAAA
PMA1 Mutant 1 TTTTTTCTcTCTTTTatacacacattcTTTTCTcTCTTTTTT
PMA1 Compensated 1 AAAAAAGAaAGAAAAatacacacattcTTTTCTcTCTTTTTT
PMA1 Mutant 2 TTTTTTCTcTCTTTTatacacacattcAAAttcatttAAAAAA
PMA1 Compensated 2 TTTTTaagcgagTTTatacacacattcAAAttcatttAAAAAA
SFT2 Wildtype GTTTTTTTTTTTTGctggTAAAAAAAAAGAAC
SFT2 Mutant 1 CAAAAAAAAAAAATctggTAAAAAAAAAGAAC
SFT2 Compensated 1 CAAAAAAAAAAAATctggGTTTTTTTTTTTTG
SFT2 Mutant 2 GTTTTTTTTTTTTGctggTAAAttttttGAAC
SFT2 Compensated 2 GTTTaaaaaaTTTGctggTAAAttttttGAAC
SFT2 Mutant 3 GTTTTTTTTTTTTGctggTAAAccccccGAAC
SFT2 Compensated 3 GTTTggggggTTTGctggTAAAccccccGAAC
PRC1 Wildtype GCTACGATcgaaATATAtACGTttttatctatgttACGTTATATATTGTAGT
PRC1 Mutant TGATGTTAcgaaTATATtTGCAttttatctatgttACGTTATATATTGTAGT
PRC1 Compensated TGATGTTAcgaaTATATtTGCAttttatctatgttTGCAATATATAGCATCG