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. 2014 Apr;55(4):765–772. doi: 10.1194/jlr.D045963

TABLE 2.

Quality control measures compared between genomic and WGA DNA sample inputs

Run Parameter Genomic DNA (n = 6) WGA DNA (n = 6) P
Mean index reads (%) (±SD) 10.3 (±1.44) 5.84 (±1.50) 0.0004
Mean coverage (±SD) 399.4 (±78.2) 264.5 (±58.0) 0.008
Targets with mean coverage <30× (%) 1.0 (±0.09) 4.0 (±1.5) 0.005
Targets with min coverage <30× (%) 4.8 (±0.8) 9.9 (±2.7) 0.005
Targets with max coverage <30× (%) 0.6 (±0.1) 2.6 (±1.1) 0.007