TABLE 2.
Quality control measures compared between genomic and WGA DNA sample inputs
Run Parameter | Genomic DNA (n = 6) | WGA DNA (n = 6) | P |
Mean index reads (%) (±SD) | 10.3 (±1.44) | 5.84 (±1.50) | 0.0004 |
Mean coverage (±SD) | 399.4 (±78.2) | 264.5 (±58.0) | 0.008 |
Targets with mean coverage <30× (%) | 1.0 (±0.09) | 4.0 (±1.5) | 0.005 |
Targets with min coverage <30× (%) | 4.8 (±0.8) | 9.9 (±2.7) | 0.005 |
Targets with max coverage <30× (%) | 0.6 (±0.1) | 2.6 (±1.1) | 0.007 |