TABLE 3.

Concordance of variants identified in technical replicates separated by location

		Concordant Callsa				Discordant Callsb
Sample ID	Input DNA	Exon: Coding	Exon: UTR	Noncoding	Total	Exon: Coding	Exon: UTR	Noncoding	Total
3344	Genomic	89	135	245	469	1	9	6	16
	WGA	86	134	240	460	4	13	11	28
3645	Genomic	100	135	236	471	0	12	8	20
	WGA	100	126	235	461	0	19	11	30
3732	Genomic	96	160	245	501	0	12	6	18
	WGA	93	151	238	482	3	20	14	37
4221	Genomic	98	132	247	477	0	6	9	15
	WGA	96	130	247	473	2	10	6	18
4270	Genomic	83	122	221	426	0	9	8	17
	WGA	81	117	219	417	2	14	9	25
4667	Genomic	93	124	226	443	2	8	12	22
	WGA	89	114	224	427	5	18	11	34

Noncoding refers to intronic and intergenic variants.

^aConcordant calls refer to a variant being identified and identical genotype called between the original and replicate sample.

^bDiscordant calls refer to a variant identified in both samples but genotype was called differently, or the variant was called in either the original or replicate sample.