Table 2. Taxa with significantly different relative abundance between manured soils with or without SDZ treatments as revealed by barcoded pyrosequencing using the reverse primer (Bonferroni adjusted p value<0.05).
| Phylum | Class | Order | Family | Genus | Day 60 | Day 123 | Day 193 | ||||
| S0 | S10 | S0 | S10 | S0 | S10 | S100 | |||||
| Proteobacteria | Alphaproteobacteria | Rhizobiales | Hyphomicrobiaceae | Devosia | 0.4±0 | 1.5±0 | 1.8±1 | 2.2±0 | 1.5±0b | 2.6±1a | 3.5±1a |
| Rhizobiaceae | 0.4±0 | 0.3±0 | 0.3±0 | 0.5±0 | 0.6±0a | 0.4±0ab | 0.4±0b | ||||
| Rhodospirillales | Rhodospirillaceae | Magnetospirillum | 0.4±0 | 0.4±0 | 0.3±0 | 0.6±0 | 0.8±0ab | 0.9±0a | 0.5±0b | ||
| Sphingomonadales | Sphingomonadaceae | 4±1 | 3.4±1 | 4±1 | 3.4±1 | 5.4±1a | 3.6±0b | 3.4±1b | |||
| Betaproteobacteria | Burkholderiales | Alcaligenaceae | 0.1±0 | 0.1±0 | 0.1±0 | 0.1±0 | 0.1±0b | 0.1±0b | 0.8±0a | ||
| Burkholderiales_incertae_sedis | Methylibium | 1.8±0 | 1.3±0 | 1.2±0 | 1.3±0 | 2±1a | 1.8±1a | 0.9±0b | |||
| Comamonadaceae | Hydrogenophaga | 0.1±0 | 0.1±0 | 0.6±0 | 0.2±0 | 0.5±0a | 0.1±0b | 0±0b | |||
| Oxalobacteraceae | Herminiimonas | 0±0 | 0±0 | 1.2±0 | 0±0 | 0.5±0a | 0±0ab | 0±0b | |||
| Methylophilales | Methylophilaceae | 0.1±0 | 0.1±0 | 0.3±0 | 0.1±0 | 0.3±0a | 0.1±0ab | 0±0b | |||
| Rhodocyclales | Rhodocyclaceae | Shinella | 0±0 | 0±0 | 0±0 | 0.1±0 | 0±0b | 0.2±0b | 1.2±1a | ||
| Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | 0.5±1 | 0.1±0 | 0.1±0 | 0±0 | 1.2±2a | 0.2±0b | 0±0b | |
| Xanthomonadales | Xanthomonadaceae | Lysobacter | 1.6±0 | 0.7±0 | 1.7±1 | 0.6±0 | 0.9±0a | 0.2±0b | 0.1±0b | ||
| Pseudoxanthomonas | 0.7±1 | 0.4±0 | 1.9±1 | 0.4±0 | 0.7±0b | 0.4±0b | 2±2a | ||||
| Rhodanobacter | 0±0 | 0±0 | 0.3±0 | 0.3±0 | 0.3±0b | 0.9±1a | 0.2±0b | ||||
| Stenotrophomonas | 0±0 | 0±0 | 0.1±0 | 0.3±0 | 0±0b | 0.2±0b | 3.5±3a | ||||
| Deltaproteobacteria | Myxococcales | Haliangiaceae | Haliangium | 0.5±0 | 0.1±0 | 0.8±0 | 0.1±0 | 0.8±0a | 0.1±0b | 0.1±0b | |
| Nannocystaceae | 0.3±0 | 0±0 | 0.2±0 | 0±0 | 0.3±0a | 0.2±0ab | 0±0b | ||||
| Polyangiaceae | 0.2±0 | 0.3±0 | 0.2±0 | 0.3±0 | 0.3±0b | 0.2±0b | 0.8±1a | ||||
| Acidobacteria | Acidobacteria_Gp10 | Gp10 | 2.8±0 | 4.3±1 | 2±0 | 5.4±1 | 1.6±0c | 4.4±0a | 2.5±1b | ||
| Acidobacteria_Gp4 | Gp4 | 7.9±1 | 8.6±1 | 4.4±0 | 5±1 | 7.5±2a | 5.8±2a | 4.5±1b | |||
| Acidobacteria_Gp6 | Gp6 | 18.2±2 | 22.1±3 | 14.2±2 | 17.8±0 | 13.6±3b | 15.8±3a | 11.1±2c | |||
| Firmicutes | Bacilli | Lactobacillales | 0.1±0 | 0.1±0 | 0±0 | 0.4±0 | 0.1±0b | 0.2±0ab | 0.5±0a | ||
| Clostridia | Clostridiales | Clostridiaceae | Clostridium | 0.5±0 | 0.4±0 | 1.2±1 | 1.1±0 | 1.4±0b | 1.7±0b | 3.7±1a | |
| Clostridia | Peptostreptococcaceae | Peptostreptococcus | 0.1±0 | 0.1±0 | 0.1±0 | 0.5±0 | 0.3±0b | 0.4±0ab | 0.8±0a | ||
| Bacteroidetes | Sphingobacteria | Sphingobacteriales | Cytophagaceae | Adhaeribacter | 1.7±0 | 0.9±0 | 1.5±0 | 0.7±0 | 2.1±1a | 0.6±0b | 0.4±0b |
| Actinobacteria | Actinobacteria | Actinomycetales | Microbacteriaceae | Leifsonia | 0±0 | 0.1±0 | 0±0 | 0.1±0 | 0±0b | 0.2±0b | 0.4±0a |
| Chloroflexi | Anaerolineae | Anaerolineales | Anaerolineaceae | 1±0 | 1.1±0 | 1.9±0 | 1.9±0 | 1.5±0b | 1.8±1ab | 2.2±1a | |
| Gemmatimonadetes | Gemmatimonadetes | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | 1.1±1 | 1.6±0 | 0.5±0 | 1.7±2 | 0.7±0c | 1.6±1b | 2.5±1a |
| Planctomycetes | Planctomycetacia | Planctomycetales | Planctomycetaceae | 2.7±0 | 2.6±1 | 2.5±0 | 2.4±0 | 2.6±1a | 2.5±0a | 1.7±0b | |
| Verrucomicrobia | Subdivision3 | Subdivision3_genera_incertae_sedis | 0.4±0 | 0.3±0 | 0.6±0 | 0.5±0 | 0.4±0a | 0.5±0a | 0.1±0b | ||
Bold numbers indicate taxa with significantly higher relative abundance in SDZ treated or non treated soils; letters a, b and c indicate taxa with significant difference in relative abundance between S0, S10 and S100 treated soils collected at day 193. Soils were collected 60 days after each manure application.