Table 1. Statistics on data collection, phasing, and refinements of CBA120 TSP1 structure.
Data Collection | |||||
Se-Met TSP1 | Wild-type TSP1 | ||||
Peakb | Inflectionb | High Remoteb | Low Remotec | ||
Wavelength (Å) | 0.97945 | 0.97961 | 0.94945 | 1.03320 | 1.03320 |
Space Group | P212121 | ||||
Cell Dimension (Å) | 123.23, 153.09, 171.44 | 123.61, 147.82, 170.63 | |||
aResolution (Å) | 20–2.2 (2.26–2.2) | 20–2.2 (2.26–2.2) | 20–2.2 (2.26–2.2) | 90–1.8 (1.85–1.8) | 73.9–1.8 (1.85–1.8) |
aCompleteness (%) | 99.0 (96.3) | 98.7 (95.1) | 98.9 (95.7) | 99.6 (99.1) | 99.8(99.6) |
No. of unique Reflections | 316917 | 317685 | 317478 | 297461 | 298512 |
aRedundancy | 3.4 (2.6) | 3.4 (2.6) | 3.4 (2.6) | 6.5 (4.2) | 6.7 (4.9) |
a R merge | 0.087 (0.363) | 0.096 (0.448) | 0.095 (0.413) | 0.087 (0.500) | 0.094 (0.510) |
a I/σ(I) | 10.3 (2.6) | 9.4 (2.0) | 9.6 (2.2) | 13.3 (2.1) | 11.9 (2.2) |
MAD-Phasing | |||||
aResolution | 20–2.3 (2.41–2.30) | ||||
No. of Se atoms (found/correct) | 32/29 | ||||
aInitial figure of merit (FOM) | 0.46 (0.27) | ||||
aFOM after density modification | 0.67 (0.32) | ||||
Refinement | |||||
Se-Met TSP1 | Wild-type TSP1 | ||||
aResolution (Å) | 90–1.8 (1.82–1.8) | 63.4–1.8 (1.85–1.8) | |||
a R work | 0.187 (0.369) | 0.189 (0.375) | |||
a R free | 0.204 (0.384) | 0.207 (0.398) | |||
RMSD bond length (Å)/bond angle (°) | 0.008/1.1 | 0.007/1.4 | |||
Ramachandran plot: Favored/Allowed/Disallowed (%) | 86.6/13.2/0.2 | 87.0/12.9/0.1 | |||
No. of protein atoms | 16865 | 16972 | |||
No. of Zn2+ ion | 1 | 1 | |||
No. of water molecules | 2361 | 2449 |
The values in parentheses are for the highest resolution shell.
R merge = Σhkl [(Σj|Ij−<I>|)/Σj|Ij|].
R work = Σhkl| |Fo|−|Fc| |/Σhkl|Fo|, where Fo and Fc are the observed and calculated structure factors, respectively.
R free is computed from 5% randomly selected reflections that were omitted from the refinement.
data processed with anomalous signal.
data processed without anomalous signal (for refinement only).