Table 3.
A list of some of the important differentially expressed genes between the different ripening stages in MT and WT, including genes involved in plant hormone biosynthesis/signal transduction, cell-wall metabolism, sucrose-related genes, ascorbate and aldarate metabolism, and protein processing in the endoplasmic reticulumHere, 170, 190 and 210 indicate 170, 190 and 210 DAF, respectively. The change fold is shown as a log2 ratio.
| Gene accession | Gene description | WT fold change | MT fold change | ||
|---|---|---|---|---|---|
| 190 vs 170 | 210 vs 190 | 190 vs 170 | 210 vs 190 | ||
| Plant hormone signal transduction | |||||
| Cs8g20420 | PP2C 25 | 1.25 | 1.37 | – | 2.20 |
| Cs9g18020 | PP2C 8 | 1.04 | – | 1.46 | – |
| Cs4g17960 | ein3-binding f-box protein 4 | –1.98 | – | – | – |
| Cs9g08850 | Ethylene response 2 | –1.96 | 1.44 | 1.99 | |
| Cs7g30500 | PYL4 | –1.77 | – | –1.32 | – |
| Cs4g18640 | PYL2 | – | – | 11.21 | – |
| Cs3g18000 | Serine/threonine-protein kinase SRK2 | – | – | 1.24 | – |
| Cs1g03300 | EREBP-like factor | – | – | 1.25 | – |
| Cs8g12880 | Ethylene response 3 | – | – | – | 1.01 |
| Plant hormone biosynthesis | |||||
| Cs5g14370 | NCED1 | 2.69 | – | 4.40 | 1.28 |
| Cs8g05940 | ABA 8′-hydroxylase | –2.44 | – | –1.36 | –2.15 |
| Cs1g09250 | ABA 8′-hydroxylase | –1.37 | – | – | |
| Cs8g14150 | NCED2 | – | –2.61 | –2.04 | |
| Cs3g23530 | ABA 8′-hydroxylase | – | –1.76 | – | – |
| Cs7g14820 | NCED4 | – | –1.01 | – | – |
| orange1.1t00416 | ACS | – | –3.14 | – | –2.28 |
| Cs9g01410 | SAMD | – | – | – | –1.11 |
| Cs4g13870 | ACO1 | – | 2.80 | – | 2.27 |
| Cs4g02260 | SAMD | – | –2.53 | –1.40 | –2.95 |
| Cs2g20590 | ACO | – | –2.58 | –1.37 | – |
| Cs2g02500 | ACO | – | –2.41 | – | –5.85 |
| Cell-wall metabolism | |||||
| Cs4g03200 | XET | –1.51 | – | – | –1.25 |
| Cs4g03220 | XET | – | –3.34 | 3.14 | –4.28 |
| Cs4g03130 | XET | – | –3.28 | 1.89 | – |
| Cs4g03060 | XET | – | – | – | –11.17 |
| Cs4g03210 | XET | – | – | – | –3.36 |
| orange1.1t02719 | Pectinesterase 3 | –1.75 | –1.14 | –1.82 | –1.41 |
| Cs4g15560 | Pectinesterase PPE8B | – | – | 1.98 | – |
| Cs4g06650 | PME3 | –2.39 | –1.44 | –1.88 | –3.19 |
| Cs4g06630 | Thermostable pectinesterase | –1.34 | – | – | –1.41 |
| Cs3g14650 | Pectinesterase | – | –10.48 | – | – |
| Cs3g14610 | Pectinesterase | – | – | 1.12 | – |
| Cs2g07660 | Pectinesterase 2.2 | –1.72 | – | –2.31 | –2.79 |
| orange1.1t00402 | Polygalacturonase | – | –11.14 | – | – |
| Cs9g03730 | Polygalacturonase | –1.28 | – | – | – |
| Cs2g22990 | GAUT1 | – | –1.32 | – | – |
| Cs7g16980 | GAUT1 | –1.10 | –1.74 | – | –1.60 |
| Cs5g27650 | GAUT1 | –1.15 | – | – | – |
| Cs3g24380 | GAUT8 | –1.02 | – | – | –1.17 |
| Cs9g02570 | β-Glucosidase | 1.92 | – | 2.75 | – |
| Cs8g08680 | β-Glucosidase | 1.45 | –1.51 | – | – |
| Cs7g23860 | β-Glucosidase | – | –1.47 | –1.09 | – |
| Cs7g01340 | β-Glucosidase | –1.89 | – | – | – |
| Sucrose-related genes | |||||
| Cs6g15930 | Sucrose synthase 2 | – | –10.81 | – | – |
| Cs5g19060 | Sucrose-phosphate synthase | – | – | –1.38 | – |
| Cs3g22560 | Citrus sucrose transporter 1 | – | –2.61 | – | –1.22 |
| Ascorbate and aldarate metabolism | |||||
| Cs2g21220 | l-Ascorbate oxidase | – | – | – | –1.44 |
| Cs5g09230 | l-Ascorbate oxidase | –1.21 | –1.49 | –1.63 | –2.18 |
| Cs1g23090 | l-Ascorbate oxidase | –2.22 | –1.72 | –1.59 | –2.47 |
| Cs2g29090 | l-Ascorbate oxidase | –2.84 | –3.40 | –3.34 | –10.30 |
| Cs5g11560 | UDPglucose 6-dehydrogenase | –1.36 | – | –2.05 | – |
| Protein processing in endoplasmic reticulum | |||||
| orange1.1t03636 | HSP20 family protein | – | – | 2.44 | – |
| orange1.1t03235 | HSP20 family protein | – | – | 2.97 | – |
| Cs8g19540 | HSP20 family protein | – | – | – | 1.12 |
| Cs8g18360 | HSP18.1A | – | – | 1.14 | – |
| Cs8g18020 | HSP18.1A | – | – | 1.86 | – |
| Cs7g29040 | Heat-shock 70kDa protein 1/8 | 1.65 | – | – | – |
| Cs6g07320 | HSP20 family protein | – | – | 1.45 | – |
| Cs5g04230 | HSP20 family protein | – | –11.03 | – | – |
| Cs4g05880 | HSP20 family protein | – | – | 1.99 | – |
| Cs2g24360 | HSP20 family protein | – | – | 1.49 | – |
| Cs2g24040 | HSP20 family protein | – | – | 2.04 | – |