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. Author manuscript; available in PMC: 2014 Mar 27.
Published in final edited form as: J Med Chem. 2008 Dec 25;51(24):7751–7767. doi: 10.1021/jm801245v

Table 3.

Calculated ligand – telomeric quadruplex DNA docking interaction energies (kcal mol-1).

G-Quadruplex Interaction Energy
Total Energy van der Waals Electrostatic
9a - 1103.23 ± 13.61 - 101.06 ± 3.21 - 1002.17 ± 12.83
9b - 1157.49 ± 7.33 - 102.39 ± 3.02 - 1055.07 ± 7.42
9c - 1177.01 ± 16.24 - 105.31 ± 3.79 - 1071.66 ± 18.56
9d - 1102.44 ± 10.98 - 94.20 ± 5.04 - 1008.24 ± 14.99
9e -1188.99 ± 14.71 - 96.98 ± 3.10 - 1092.01 ± 12.96
9f - 1171.68 ± 28.58 - 103.69 ± 3.56 - 1069.80 ± 27.58
9g - 1140.28 ± 34.06 - 89.54 ± 4.37 - 1050.74 ± 31.76
9h - 1132.65 ± 25.47 - 102.92 ± 2.94 - 1029.72 ± 25.30
9i - 134.71 ± 5.52 - 92.02 ± 2.39 - 42.68 ± 6.48
15a - 1174.23 ± 17.09 - 100.89 ± 3.44 - 1073.36 ± 16.11
15b - 1182.22 ± 19.06 - 102.35 ± 2.98 - 1079.88 ± 20.41
15c - 1167.67 ± 16.91 - 103.31 ± 2.66 - 1064.37 ± 16.35