Appendix 1.
Chilean endemic genera and species used in this study, with their GenBank accession numbers.
| Genus | Species | rbcL | trnL-F | matK | ITS | ndhF |
|---|---|---|---|---|---|---|
| Adenopeltis | serrata | AY794844 | AY794633 | AB268058 | ||
| Balsamocarpon | brevifolium | AB268058 | AF430761 | EU361864 | AY308548 | |
| Bridgesia | incisifolia | AY724347 | EU721435 | EU720645 | EU720476 | |
| Calopappus | acerosus | FJ979685 | ||||
| Centaurodendron | palmiforme | JF754757 | JF754806 | |||
| Conanthera | bifolia | JX903230 | ||||
| Copiapoa | bridgesii | AY015293 | DQ855879 | |||
| Cyphocarpus | rigescens | L18792 | ||||
| Dendroseris | litoralis | DQ840434 | AJ633305 | |||
| Desmaria | mutabilis | EF464527 | DQ340603 | EF464509 | DQ333852 | |
| Dinemagonum | gayanum | AF344468 | HQ247265 | AF351084 | ||
| Dinemandra | ericoides | AF344469 | AF351002 | AF344542 | AF351069 | |
| Ercilla | volubilis | AJ235800 | AY042583 | |||
| Eriosyce | islayensis | JF975709 | AY015337 | AY064351 | ||
| Eulychnia | acida | AY566663 | ||||
| Fascicularia | bicolor | FJ942957 | AY950023 | HQ895749 | ||
| Francoa | appendiculata | DQ452889 | ||||
| Gomortega | nitida | AF012404 | AF289846 | |||
| Guynesomia | scoparia | DQ479035 | ||||
| Gymnachne | koelerioides | EU395896 | DQ786918 | EU395919 | DQ786846 | |
| Gypothamnium | pinifolium | EU736105 | EU729338 | EU729342 | EU729346 | |
| Homalocarpus | dissectus | DQ133812 | DQ133791 | |||
| Huidobria | fruticosa | AY254247 | AY254064 | |||
| Ivania | cremnophila | HQ541176 | ||||
| Juania | australis | AJ829874 | AM113638 | AM114608 | ||
| Jubaea | chilensis | AJ829875 | EU004863 | EU004869 | EU004878 | |
| Lactoris | fernandeziana | L08763 | AY145342 | DQ882195 | ||
| Lapageria | rosea | Z77301 | AY624480 | AY225008 | ||
| Latua | pubiflora | EU581011 | EU580903 | |||
| Legrandia | concinna | AM489990 | AM234072 | |||
| Leonotochir | ovallei | AY120369 | AY224996 | |||
| Leucocoryne | coquimbensis | Z69199 | AF508518 | AF508407 | ||
| Megalachne | berteroniana | FR692028 | ||||
| Miquelopuntia | miquelii | HM041303 | HM041722 | |||
| Mosleftia | solbrigii | EF530306 | EF530219 | |||
| Notanthera | heterophylla | EF464529 | DQ340606 | EF464511 | DQ333855 | |
| Ochagavia | carnea | JF280726 | HQ882744 | EU681905 | HQ895755 | |
| Oxyphyllum | ulicinum | EU736104 | EU729340 | EU729344 | EU729348 | |
| Peumus | boldus | AF206807 | AF012403 | AJ247183 | GU177689 | |
| Phrodus | microphyllus | FJ914176 | FJ189725 | FJ439765 | EU742306 | |
| Pintoa | chilensis | AJ133858 | AJ387954 | |||
| Placea | arzae | FJ349191 | FJ264228 | |||
| Podophorus | bromoides | FR692035 | ||||
| Robinsonia | gracilis | EF538118 | GU817514 | EF538290 | ||
| Sarmienta | repens | AY364264 | EF445701 | U62194.2 | ||
| Scyphanthus | elegans | AY254298 | AF503334 | |||
| Tecophilaea | cyanocrocus | HM640544 | AJ290310 | HM640661 | ||
| Thyrsopteris | elegans | JF303910 | ||||
| Traubia | modesta | AF116986 | AF104748 | FJ264237 | ||
| Trevoa | quinquinervia | AY642155 | ||||
| Valdivia | gayana | AJ575924 | GQ984052 | GQ983642 | AJ419703 | |
| Vestia | lycioides | AY206769 | EF438822 | AY206751 | ||
| Zephyra | elegans | Y17340 | AJ290311 | AJ579994 |