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. 2014 Mar 27;9(3):e93205. doi: 10.1371/journal.pone.0093205

Table 1. Protein and nucleotide sequence analysis of 17 xrp genes.

RS105 Xrp Protein ID in BLS256 Gene ID in BLS256 Ser and Proa Ser Pro Leub Asp and Gluc 3rd AA 4th AA PIP box-liked −10 Box-like
position 5′-3′ sequence
Xrp1 YP_005627937 XOC_1601 8 6 2 8 0 T H −96/−75 TTCGC-N12-TTCGC Ne
Xrp2 YP_005630809 XOC_4584 6 4 2 2 0 K F −106/−85 TTCGT-N12-TTCGT N
Xrp3 YP_005630213 XOC_3956 10 6 4 3 1 T R N N
Xrp4 YP_005630212 XOC_3955 8 6 2 7 2 R H N N
Xrp5 YP_005627898 XOC_1550 8 7 1 7 2 G E N N
Xrp6 YP_005629702 XOC_3440 6 5 1 4 1 V E N N
Xrp7 YP_005630808 XOC_4583 9 2 7 6 1 S L N N
Xrp8 YP_005628761 XOC_2462 9 6 3 6 1 G L −81/−56 TTCGA-N16-TTCGA N
Xrp9 YP_005628272 XOC_1951 11 3 8 8 0 L R −114/−69 TTCGT-N6-TTCGA-N25-TTCGC -N33-TATGAT
Xrp10 YP_005626937 XOC_0560 6 2 4 1 0 V P N N
Xrp11 YP_005629396 XOC_3130 8 8 0 4 1 I Q N N
Xrp12 YP_005630266 XOC_4010 5 2 3 8 1 A L N N
Xrp13 YP_005627233 XOC_0860 5 1 4 5 1 L A −240/−211 TTCGC-N20-TTCGG N
Xrp14 YP_005626509 XOC_0084 10 3 7 4 2 D D −61/−26 TTCGC-N25-TTCGC N
Xrp15 YP_005629104 XOC_2829 2 1 1 5 1 I E −121/−90 TTCGA-N21-TTCGC N
Xrp16 YP_005629103 XOC_2828 5 3 2 5 0 A P −362/−331 TTCGA-N22-TTCGG N
Xrp17 hrpFB 2 2 0 6 1 Y F N N
a

Number of Ser and Pro residues in the N-terminal 50 amino acids.

b

Number of Leu residues in the N-terminal 50 amino acids.

c

Number of Asp and Glu residues in the N-terminal 12 amino acids.

d

Includes an imperfect PIP-box like sequence (TTCGB-Nx-TTCGB,B,A/T/C/G) in the respective promoter.

e

No corresponding characteristics.