Table 1. Three-dimensional structural alignment of viral OTU domains against selected structures in the Protein Data Bank using the DALI server [56].
DALI Query: | CCHFV OTU | DUGV OTU | TYMV PRO | EAV PLP2 |
3PT2 [23] | 4HXD [25] | 4A5U [27], [28] | 4IUM [26] | |
Human OTUD3 | 14.5; 12%* | 14.4; 15% | 7.6; 12% | 4.2; 13% |
4BOU [46] | 2.1 Å (123)** | 2.1 Å (123) | 1.9 Å (85) | 2.4 Å (69) |
Yeast OTU1 | 11.8; 16% | 11.6; 20% | 7.3; 12% | 5.1; 9% |
3BY4 [57] | 2.9 Å (126) | 2.5 Å (123) | 2.3 Å (91) | 3.3 Å (81) |
CCHFV OTU | 28.1; 55% | 6.8; 15% | 4.6; 19% | |
3PT2 [23] | 0.9 Å (157) | 3.0 Å (91) | 2.6 Å (74) | |
DUGV OTU | 6.9; 12% | 4.5; 19% | ||
4HXD [25] | 2.8 Å (90) | 2.6 Å (74) | ||
TYMV PRO | 3.2; 13% | |||
4A5U [27], [28] | 2.8 Å (64) |
*z-score (>2 indicates significant structural similarity [59]); % sequence identity.
**Root-mean-square deviation (RMSD) values are indicated, followed by the number of residues used for RMSD calculation in brackets. Value represents the average distance (Å) between alpha carbons used for comparison.