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. 2014 Mar 27;10(3):e1003894. doi: 10.1371/journal.ppat.1003894

Table 1. Three-dimensional structural alignment of viral OTU domains against selected structures in the Protein Data Bank using the DALI server [56].

DALI Query: CCHFV OTU DUGV OTU TYMV PRO EAV PLP2
3PT2 [23] 4HXD [25] 4A5U [27], [28] 4IUM [26]
Human OTUD3 14.5; 12%* 14.4; 15% 7.6; 12% 4.2; 13%
4BOU [46] 2.1 Å (123)** 2.1 Å (123) 1.9 Å (85) 2.4 Å (69)
Yeast OTU1 11.8; 16% 11.6; 20% 7.3; 12% 5.1; 9%
3BY4 [57] 2.9 Å (126) 2.5 Å (123) 2.3 Å (91) 3.3 Å (81)
CCHFV OTU 28.1; 55% 6.8; 15% 4.6; 19%
3PT2 [23] 0.9 Å (157) 3.0 Å (91) 2.6 Å (74)
DUGV OTU 6.9; 12% 4.5; 19%
4HXD [25] 2.8 Å (90) 2.6 Å (74)
TYMV PRO 3.2; 13%
4A5U [27], [28] 2.8 Å (64)

*z-score (>2 indicates significant structural similarity [59]); % sequence identity.

**Root-mean-square deviation (RMSD) values are indicated, followed by the number of residues used for RMSD calculation in brackets. Value represents the average distance (Å) between alpha carbons used for comparison.