Table 1. Total number of clean and mapped reads and bases for each sample following mRNA-seq.
SAMPLE | CLEAN READS | MAPPED READS | % MAPPED | TOTAL BASES | MAPPED BASES | TRANSCRIPTOME COVERAGE |
Control 1 | 16777955 | 14617162 | 87.1 | 855675705 | 745475262 | 14.3× |
100 pM Mel 1 | 17302219 | 15224369 | 88.0 | 882413169 | 776442819 | 14.7× |
1 mM Mel 1 | 12395079 | 10782224 | 87.0 | 632149029 | 549893424 | 10.5× |
Control 2 | 12383964 | 10938665 | 88.3 | 631582164 | 557871915 | 10.5× |
100 pM Mel 2 | 18378365 | 16281804 | 88.6 | 937296615 | 830372004 | 15.6× |
1 mM Mel 2 | 17452335 | 15331176 | 87.9 | 890069085 | 781889976 | 14.8× |
Sequences were mapped to the Arabidopsis TAIR10 genome using TopHat.