Table 1. Total number of clean and mapped reads and bases for each sample following mRNA-seq.

SAMPLE	CLEAN READS	MAPPED READS	% MAPPED	TOTAL BASES	MAPPED BASES	TRANSCRIPTOME COVERAGE
Control 1	16777955	14617162	87.1	855675705	745475262	14.3×
100 pM Mel 1	17302219	15224369	88.0	882413169	776442819	14.7×
1 mM Mel 1	12395079	10782224	87.0	632149029	549893424	10.5×
Control 2	12383964	10938665	88.3	631582164	557871915	10.5×
100 pM Mel 2	18378365	16281804	88.6	937296615	830372004	15.6×
1 mM Mel 2	17452335	15331176	87.9	890069085	781889976	14.8×

Sequences were mapped to the Arabidopsis TAIR10 genome using TopHat.