Table II.
Ch | SNP | Closest gene∗ | Type | Discovery |
Replication |
||||
---|---|---|---|---|---|---|---|---|---|
N† | ORint‡ | Pf | N† | ORint‡ | Pf | ||||
1 | rs2026604 | S100A7L2 | Downstream | 3048 | 1.44 | 7.49 × 10−5 | 1003 | 0.83 | .17 |
2 | rs10184453 | — | Intergenic | 3048 | 1.53 | 8.85 × 10−5 | 1003 | 1.18 | .30 |
2 | rs895565 | — | Intergenic | 3048 | 1.53 | 7.26 × 10−5 | 1003 | 1.18 | .30 |
2 | rs11126185 | — | Intergenic | 3048 | 0.67 | 6.81 × 10−6 | 868 | 1.22 | .16 |
3 | rs4234677 | CTD-2230D16.1 | Within noncoding gene | 3048 | 0.65 | 6.57 × 10−5 | 261 | 1.58 | .22 |
3 | rs264096 | MAGI1 | Intronic | 3048 | 0.62 | 6.93 × 10−6 | 396 | 0.89 | .63 |
3 | rs17239426 | KCNAB1 | Intronic | 3048 | 0.58 | 7.28 × 10−5 | 1003 | 1.18 | .39 |
4 | rs1425551 | IRF2 | Intronic | 3048 | 1.40 | 6.92 × 10−5 | 1003 | 0.98 | .86 |
5 | rs162036 | MTRR | Nonsynonymous | 3048 | 0.60 | 8.26 × 10−5 | 1003 | 1.14 | .45 |
5 | rs7719963 | — | Intergenic | 3048 | 0.56 | 3.06 × 10−5 | 868 | 0.89 | .59 |
5 | rs7447231 | — | Intergenic | 3048 | 1.55 | 8.36 × 10−6 | 868 | 0.85 | .31 |
5 | rs10155635 | — | Intergenic | 3048 | 1.56 | 7.55 × 10−6 | 261 | 0.62 | .11 |
5 | rs10038850 | — | Intergenic | 3048 | 1.53 | 1.51 × 10−5 | 261 | 0.41 | .04 |
5 | rs10479335 | — | Intergenic | 3048 | 1.52 | 5.98 × 10−5 | 868 | 0.85 | .29 |
5 | rs2312164 | — | Intergenic | 3048 | 1.42 | 7.18 × 10−5 | 1003 | 0.82 | .14 |
5 | rs13357477 | — | Intergenic | 3048 | 1.58 | 3.59 × 10−6 | 868 | 0.83 | .24 |
5 | rs12719549 | — | Intergenic | 3048 | 1.57 | 4.61 × 10−6 | 868 | 0.82 | .21 |
5 | rs4607330 | — | Intergenic | 3048 | 1.59 | 2.70 × 10−6 | 868 | 0.85 | .31 |
6 | rs441463 | LYRM4 | Intronic | 3048 | 1.41 | 4.91 × 10−5 | 1003 | 0.90 | .42 |
6 | rs1575472 | PACRG | Intronic | 3048 | 1.78 | 1.37 × 10−5 | 1003 | 1.51 | .06 |
7 | rs17544971 | GRB10 | Intronic | 3048 | 1.70 | 8.12 × 10−5 | 868 | 1.26 | .28 |
9 | rs4977750 | MTAP | Nonsense-mediated decay transcript | 3048 | 0.61 | 1.91 × 10−5 | 1003 | 0.93 | .66 |
13 | rs4769148 | — | Intergenic | 2445 | 0.67 | 4.45 × 10−5 | 261 | 0.72 | .21 |
13 | rs12874184 | — | Intergenic | 3048 | 1.98 | 8.75 × 10−5 | 868 | 1.18 | .50 |
13 | rs16972472 | — | Intergenic | 3048 | 1.79 | 9.59 × 10−5 | 868 | 0.79 | .32 |
14 | rs10141836 | OR11G2 | Upstream | 3048 | 0.70 | 8.89 × 10−5 | 1003 | 0.90 | .41 |
15 | rs2602923 | C15orf41 | Intronic | 3048 | 1.61 | 4.52 × 10−5 | 1003 | 1.19 | .33 |
16 | rs13331814 | ZP2 | Intronic | 3048 | 0.62 | 8.38 × 10−5 | 868 | 0.85 | .34 |
19 | rs11085080 | PLIN5 | Intronic | 3048 | 0.51 | 6.30 × 10−5 | 1003 | 1.12 | .63 |
20 | rs6077755 | PSMF1 | Upstream | 3048 | 1.52 | 6.65 × 10−6 | 1003 | 1.11 | .47 |
X | rs6641609 | PRKX | Intronic | 1939 | 0.49 | 3.43 × 10−5 | 261 | 1.90 | .15 |
Ch, Chromosome; ORint, odds ratio interaction; Pf, P value, fixed effect.
Closest gene within range of 500 kb of the position of the SNP.
Number of cases and control subjects included in the meta-analysis.
Additive genetic model.