Table 2.
Mutation sites in 5’ UTR and polyprotein comparing strain Macocy, Nancy, 28 and 0
| Strain | Nucleotide sites (nt)c | Amino acid sites (aa)d | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|||||||||||
| 5’ UTR (1-742) | VP3 (333-570) | VP1 (571-854) | 2A (855-1001) | 3A (1430-1518) | ||||||||
|
|
|
|||||||||||
| 125 | 234 | 408 | 529 | 578 | 581 | 586 | 231 (563) | 234 (566) | 259 (829) | 7 (861) | 57 (1486) | |
| Macocya | A | U | G | T | A | T | T | I | K | R | V | Y |
| Nancy | G | U | A | C | G | C | C | T | E | K | A | H |
| 28 | A | U | A | T | A | C | T | I | E | K | A | H |
| 0b | A | C | A | T | A | C | T | I | E | K | A | H |
a
Positions in bold are unique in strain Macocy comparing the other cadiovirulence strain-Nancy and 28.
b
The position in bold are unique in strain 0 comparing the cardiovirulence strains.
c
Positions are numbered from the start of the nucleotide sequence.
d
Position numbers out of the brackets are started from the N-terminal of each mature protein sequence, and position numbers in the brackets are started from the start coden for each potein sequence.