Table 1.
Sequence statistics
|
Sample type |
|
|
Control |
|
|
|
Tumor |
|
|---|---|---|---|---|---|---|---|---|
|
Number of patient samples |
|
|
65 |
|
|
|
65 |
|
| Read pairs | Minimum | Maximum | Mean ± SD | Proportion of raw read pairs (%) | Minimum | Maximum | Mean ± SD | Proportion of raw read pairs (%) |
| Raw sequenced |
2,393,763 |
5,991,413 |
3,854,055 ± 731,259 |
100.0 |
1,467,161 |
10,121,411 |
4,371,501 ± 1,435,367 |
100.0 |
| Quality filtered and host subtracted |
747,357 |
2,404,589 |
1,259,480 ± 288,807 |
32.7 |
507,402 |
3,426,796 |
1,403,283 ± 475,582 |
32.0 |
| Mapping unambiguously to microbial genomes |
646 |
792,618 |
44,625 ± 103,949 |
1.2 |
445 |
219,314 |
27,191 ± 39,676 |
0.6 |
| Distinct microbial genera observed | 372 | 441 |