Table 2.
Genome statistics for the S. flexneri genomes sequenced in this study
| Serotype | Number of high quality mapped reads | Average coverage of S. flexneri 2457 T reference | Kmer used in Velvet assembly | N50 | Number of contigs | De novo assembly genome size |
|---|---|---|---|---|---|---|
| 1a |
5593126 |
121.5896957 |
79 |
31660 |
526 |
4369471 |
| 1b |
5332110 |
115.9154348 |
79 |
31344 |
387 |
4176066 |
| 1c |
5593956 |
121.6077391 |
81 |
30176 |
425 |
4255254 |
| 2a |
5541229 |
120.4615 |
79 |
33398 |
417 |
4262526 |
| 2b |
4869600 |
105.8608696 |
77 |
32299 |
421 |
4328906 |
| 3a |
4590499 |
99.79345652 |
77 |
33146 |
510 |
4601423 |
| 3b |
4803610 |
104.4263043 |
79 |
33159 |
450 |
4494495 |
| 3c |
5604902 |
121.8456957 |
81 |
33478 |
451 |
4495552 |
| 4a |
5328467 |
115.8362391 |
81 |
33309 |
413 |
4267213 |
| 4b |
5106835 |
111.0181522 |
79 |
34439 |
391 |
4188134 |
| 5a |
5461876 |
118.7364348 |
79 |
29622 |
443 |
4362146 |
| 5b |
5250432 |
114.1398261 |
79 |
29416 |
459 |
4354058 |
| 6 |
6350211 |
138.0480652 |
85 |
20677 |
614 |
4401927 |
| E1037 |
15797791 |
343.4302391 |
93 |
36513 |
378 |
4350496 |
| X |
17982247 |
390.918413 |
93 |
33586 |
414 |
4324701 |
| Y | 20943063 | 455.2839783 | 95 | 29717 | 447 | 4491024 |