Skip to main content
. 2013 Jul 2;2(3):506–544. doi: 10.3390/cells2030506

Table 3.

Main simulation parameters.

Name Example values in Section 3 Meaning
Reactor volume 800Å × 400Å × 600Å Size of the reaction space
Reactor Shape Cubic Shape of the reaction space
Boundary conditions Reflective Boundary conditions can be reflective, harmonic or gran, for example
Initial states Random or fixed The initial state can be specified by exactly specifying components and their initial positions. Alternatively, the positions are generated randomly.
Simulation time 8 × 106 time-step Duration of the simulation
Force Leonard-Jones The conservative force between particles additional to the friction. Other possibilities are EAM, hybrid LJor no interaction.