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. Author manuscript; available in PMC: 2014 Apr 2.
Published in final edited form as: Nat Genet. 2013 Apr 7;45(5):501–512. doi: 10.1038/ng.2606

Table 2.

Association results for novel genome-wide significant (P < 5 × 10-8) SNPs with height and obesity-related traits

SNP Gene Effect
allele
Other
allele
BMI tails Obesity class 3 Obesity class 2 Obesity class 1 Overweight BMI
(continuous)a
Height tails Height
(continuous)a

OR P OR P OR P OR P OR P Effect P-value OR P Effect P-value
Height tails
rs584438 IGFBP4 c a 0.98 0.52 1.02 0.64 1.01 0.47 1.00 0.75 1.00 0.59 0.005 0.22 1.18 5.22E-12 0.025 9.43E-11
rs6662509 H6PD t c 1.00 0.95 1.11 0.07 1.01 0.83 0.99 0.34 0.99 0.35 -0.006 0.27 1.23 3.19E-10 0.031 7.76E-12
rs2362965 RSRC1/SHOX2 t a 0.95 0.02 0.97 0.25 0.98 0.20 0.99 0.37 0.99 0.21 -0.007 0.05 1.12 2.14E-09 0.017 7.07E-08
rs1594829 PPP2R2A c t 1.03 0.33 1.06 0.11 1.01 0.58 1.00 0.82 1.01 0.32 0.004 0.33 1.15 3.88E-08 0.016 4.29E-05

Obesity Class 2
rs7989336 HS6ST3 a g 1.09 0.0001 1.11 0.0006 1.10 1.06E-08 1.04 9.38E-05 1.04 2.33E-06 0.016 8.80E-06 1.00 0.89 -0.001 0.71
rs17381664 ZZZ3 c t 1.08 0.0001 1.12 5.41E-05 1.09 2.85E-08 1.05 6.80E-08 1.04 2.23E-07 0.022 2.50E-11 1.06 0.005 0.010 0.004

Obesity Class 1
rs17024258 GNAT2 t c 1.27 0.02 1.45 0.002 1.26 7.73E-05 1.25 8.66E-12 1.13 1.41E-08 0.067 4.34E-14 1.21 0.08 0.010 0.36
rs4735692 HNF4G a g 1.09 1.97E-05 1.08 0.006 1.05 0.0005 1.06 2.48E-09 1.04 3.51E-10 0.019 9.94E-10 1.02 0.50 0.006 0.10
rs13041126 MRPS33P4 t c 1.08 0.001 1.05 0.16 1.06 0.0002 1.06 2.16E-08 1.04 1.43E-06 0.017 8.52E-07 1.02 0.56 0.002 0.65
rs2531995 ADCY9 t c 1.06 0.01 1.09 0.006 1.06 0.001 1.07 4.04E-08 1.03 5.57E-05 0.021 6.58E-08 1.07 0.005 0.018 1.87E-06

Overweight
rs4735692 HNF4G a g 1.09 1.97E-05 1.08 0.006 1.05 0.0005 1.06 2.48E-09 1.04 3.51E-10 0.019 9.94E-10 1.02 0.50 0.006 0.10
rs7503807 RPTOR a c 1.08 7.07E-05 1.13 9.44E-06 1.07 2.46E-06 1.05 1.12E-07 1.04 1.98E-08 0.020 3.00E-10 0.99 0.55 -0.001 0.85
a

The beta represents the difference in standardized effects.

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