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. 1985 Mar;82(6):1594–1598. doi: 10.1073/pnas.82.6.1594

Unusual proton exchange properties of Z-form poly[d(G-C)]

Peter A Mirau 1,*, David R Kearns 1,†
PMCID: PMC397318  PMID: 16578783

Abstract

Real-time solvent-exchange NMR has been used to study the proton exchange in Z-form poly[d(G-C)]. In 4.5 M NaCl the most slowly exchanging protons (about two orders of magnitude slower than in B-DNA) are identified as the guanine imino proton and the cytosine amino proton hydrogen bonded to the guanine carbonyl. Both protons exchange at the same rate and the exchange follows single-exponential kinetics and cannot be catalyzed, implying that the exchanges of the two protons both occur from the same transient solvent-exposed state. The exchange depends strongly on temperature and the activation energy for exchange (≈22 kcal/mol) is the same as the activation energy for the B → Z transition. The rate of proton exchange is identical with the B → Z transition rate, both measured in 4.5 M NaCl. The correlation between the B → Z kinetics and the proton exchange also extends to 3.25 M NaClO4 solutions, in which both rates are 5 times faster. This unexpected parallelism between the B → Z transition kinetics and the Z exchange kinetics indicates that the rate-limiting steps in the two processes are similar.

Keywords: NMR, DNA “breathing”, B → Z kinetics, DNA dynamics

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

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