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. 2014 Jan 17;42(6):4019–4030. doi: 10.1093/nar/gkt1387

Table 1.

Summary of RNA-seq data mapping results

Sample WT KO
Clean reads 53 001 728 (100.0%) 53 138 030 (100.0%)
Mapped reads 46 152 593 (87.1%) 45 354 730 (85.4%)
Unique mapped readsa 45 512 948 (98.6%) 44 766 437 (98.7%)
Multi-mapped readsb 639 645 (1.4%) 588 293 (1.3%)
Junction readsc 15 314 481 (33.2%) 15 505 045 (34.2%)
Unmapped reads 6 847 282 (12.9%) 7 782 321 (14.6%)

aThat include paired-end reads with an unalignable mate.

bWith multiple alignments.

cAll junction reads have ≥3 offset alignments.