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. 2014 Jan 6;42(6):3783–3791. doi: 10.1093/nar/gkt1327

Figure 6.

Figure 6.

(a) Exchange results from the experimental literature [Graham et al. (16)] that demonstrate the concentration-dependent decrease in fluorescence due to a change in the unbinding reaction constant (Used by permission of Oxford University Press). (b) The analogous exchange calculation (nB versus time t) for a binding energy of Inline graphic, at concentrations relevant to experiments carried out by Graham, et al. (16). Both numerical (N) and analytical calculations (A) are performed, with quantitative matching between the two for Inline graphic in the analytical result. Qualitative matching of both of these to experimental observations in (a) is observed to occur, suggesting that this model captures much of the physics of concentration-dependent binding dynamics. Effective unbinding rate constants Inline graphic (in Inline graphic) can be extracted from these plots using exponential fits, and the results are in (c). Experimental results come from Graham, et al. (16). Qualitative matching is demonstrated, and better fits may be obtained on adjustment of both Inline graphic and Inline graphic used in the theory.