Table 4. Mobile genetic elements in the P. protegens Cab57 genome.
Type | Gene range | 5′ end | 3′ end | Size (bp) | %GC | Presence of integrase | Similarity to Pf-5 Prophage |
Prophage I | 1248 to 1284 | 1398706 | 1430358 | 31653 | 62.7 | No | Hybrid of Prophage 01 and 03 |
Prophage II | 2134 to 2148 | 2346251 | 2359004 | 12754 | 56.6 | Yes | Partly homologous to Prophage 04 and 06 |
Prophage III | 3451 to 3525 | 3840966 | 3895710 | 54745 | 57.6 | Yes | Homologous to Prophage 06 |
Prophage IV | 3558 to 3607 | 3923029 | 3966962 | 43934 | 58.1 | Yes | Homologous to Prophage 03 |
Transposon 1 | 1981 to 1998 | 2176361 | 2198710 | 22350 | 50.3 | No | None |
Transposon 2 | 3883 to 3893 | 4318849 | 4328514 | 9666 | 55.5 | Yes | None |