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. 2014 Feb 10;11(2):111–123. doi: 10.4161/rna.27992

Table 1. DNA and RNA oligonucleotides used in this study.

Oligo ID Oligonucleotide sequence (5′ → 3′) Usage
RNA anchor 5′-P-CAGCUGUAGC UAUGCGcacc gagucagauc ag-3′-NH2 sPAT RNA anchor
DNA splint CGCATAGCTA CAGCTGTTTT TTTTT sPAT DNA splint
RT anchor primer CTGATCTGAC TCGGTGCGCA sPAT RT and PCR-reverse
anchor primer TGCGCATAGC TACAGCTGTT TT sPAT PCR-reverse, inner primer
ePAT anchor GCGAGCTCCG CGGCCGCGTT TTTTTTTTTT ePAT anchor
ePAT-i GCGAGCTCCG CGGCCGCG ePAT RT and PCR-reverse
egg-1-f TCCCACTAAC AATCTCACCC C PCR-forward
oma-2-f CCCCATCTCT CGCAGGCTCT PCR-forward
rps-6-f CAGAAGCGCA ACCAGAAGAT C PCR-forward
gld-1-o TCTTCCCGGT TTGATGTAGT CATC PCR-forward, outer primer
gld-1-i AAACCCCTAC CCCTTCCCAA TC PCR-forward, inner primer
gld-1-f TGCAGTTCCT CTGCTCTCTC C qPCR-forward
gld-1-r CGTTAGATCC GAGAAGGTTG G qPCR-reverse
Xl-actin type 5-o CAAATGTTGC AGGTACACCT GT PCR-forward, outer primer
Xl-actin type 5-i GTATGTTGCC TTAATGTTCT CAC PCR-forward, inner primer
Xl-Eg2-o CCAGAGATTG GCCGGTGCAA T PCR-forward, outer primer
Xl-Eg2-i GCTGCTCGAA TACTGAGTGA AT PCR-forward, inner primer
Ppa-gld-1-o CCCCCATTTC TAGAATGTAC TAT PCR-forward, outer primer
Ppa-gld-1-i CAACCCGTTC CCCTCTTTCC PCR-forward, inner primer