Table 2. qPCR primer information and predicted product size.
Target bacterial group | Primers | DNA Sequence (5′- 3′) | Predicted PCR productsize (bp) | Annealingtemp (°C) | Reference |
Atopobium cluster | Atopo-F | GGGTTGAGAGACCGACC | 190 | 55 | [38] |
Atopo-R | CGGRGCTTCTTCTGCAGG | ||||
Bacteroides fragilis group | Bfra-F | ATAGCCTTTCGAAAGRAAGAT | 495 | 50 | [39] |
Bfra-R | CCAGTATCAACTGCAATTTTA | ||||
Bifidobacterium genus | Bifid-F | CTCCTGGAAACGGGTGG | 550 | 55 | [39] |
Bifid-R | GGTGTTCTTCCCGATATCTACA | ||||
Clostridium coccoides group | Ccoc-F | AAATGACGGTACCTGACTAA | 440 | 50 | [39] |
Ccoc-R | CTTTGAGTTTCATTCTTGCGAA | ||||
Clostridium leptum group | sg-Clept-F | GCACAAGCAGTGGAGT | 239 | 55 | [38] |
sg-Clept-R3 | CTTCCTCCGTTTTGTCAA | ||||
Clostridium perfringens group | ClPER-F | AGATGGCATCATCATTCAAC | 170 | 60 | [40] |
ClPER-R | GCAAGGGATGTCAAGTGT | ||||
Desulfovibrio genus | Dsv-F | CCGTAGATATCTGGAGGAACATCAG | 135 | 63 | [41] |
Dsv-R | ACATCTAGCATCCATCGTTTACAGC | ||||
Enterobacteriaceae family | Enter-F | TGCCGTAACTTCGGGAGAAGGCA | 428 | 60 | [42] |
Enter-R | TCAAGGACCAGTGTTCAGTGTC | ||||
Lactobacillus genus | Lac-F | AGCAGTAGGGAATCTTCCA | 341 | 58 | [43] |
Lac-R | CACCGCTACACATGGAG | ||||
Prevotella genus | g-Prevo-F | CACRGTAAACGATGGATGCC | 528 | 55 | [38] |
g-Prevo-R | GGTCGGGTTGCAGACC | ||||
All bacteria | Uni331F | TCCTACGGGAGGCAGCAGT | 466 | 58 | [44] |
Uni797R | GGACTACCAGGGTATCTATCCTGTT |