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. 2014 Apr;24(4):604–615. doi: 10.1101/gr.162172.113

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© 2014 Shao et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 3.0 Unported), as described at http://creativecommons.org/licenses/by-nc/3.0/.

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Figure 2. — Genome-wide methylation level comparisons. (A) Methylation levels of different chromosomes. Numbers after the sample names represent methylation levels of the whole genome. Only CpGs with ≥10× coverage were used for analysis. (B) Total length (Mb) of DMRs identified in each pairwise comparison. (C) Venn diagrams for DMRs of P-ZWm/P-ZWf, F1-ZWm/P-ZWf, and ZZm/P-ZWf. Numbers represent the total length (Mb) of shared DMRs. (D) Percentage of testis/ovary DMRs on different chromosomes. Background expectation for each chromosome was calculated as the covered length (≥6× in all five samples) of each chromosome divided by the total covered length of all chromosomes. (E) Percentage of testis/ovary DMRs on different genomic elements. Background expectation for each element was calculated as the covered length of each element divided by the total covered length of the genome.